View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_176 (Length: 219)
Name: NF3820_low_176
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_176 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36932276 - 36932074
Alignment:
| Q |
1 |
attgggagcttaaagttggattgaatttttatatatagaggaaataaatgaaatgctttaatgtcacatattagaatagattaaacatcataacaatagc |
100 |
Q |
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| T |
36932276 |
attgggtgctcaaagttggattgaattttttt-tatataggaaataaatgaaatgctttaatgtcacatattagaataaattaaacatcataacaatagc |
36932178 |
T |
|
| Q |
101 |
ggcaaatcataatcataaaataccatgtcatgatcaattaaccatgaatctaattgcatgaatttagaatatcatatataaagataagaagggacgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36932177 |
ggcaaatcataatcataaaataccatgtcatgatcaattaaccatgaatctaattgcatgaatttagaatatcatatataaagataagaagggacgacaa |
36932078 |
T |
|
| Q |
201 |
aatt |
204 |
Q |
| |
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|||| |
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|
| T |
36932077 |
aatt |
36932074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 39144072 - 39143959
Alignment:
| Q |
41 |
gaaataaatgaaatgctttaatgtcacatattagaatagattaaacatcataacaatagcggcaaatcat-aatcataaaataccatgtcatgatcaatt |
139 |
Q |
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||||||||| |||| || |||||||||||||||||||| ||| ||||||| |||||||||| || |||| |||||||| || |||||||||||| ||| |
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| T |
39144072 |
gaaataaataaaatactctaatgtcacatattagaataaattgcacatcatgacaatagcggaaactcataaatcataatatgtcatgtcatgatccatt |
39143973 |
T |
|
| Q |
140 |
aaccatgaatctaa |
153 |
Q |
| |
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| T |
39143972 |
agccatgaatctaa |
39143959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 39148153 - 39148024
Alignment:
| Q |
42 |
aaataaatgaaatgctttaatgtcac---atattagaatagattaaacatcataacaatagcggcaaatcata-atcataaaataccatgtcatgatcaa |
137 |
Q |
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||||||||||||| || ||||||||| ||||||||||| ||| | ||||| |||||||||| | ||||| ||||||| || |||| ||||||| | |
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| T |
39148153 |
aaataaatgaaatactctaatgtcactccatattagaataaattgcatatcatgacaatagcggatactcatatatcataatatgtcatgccatgatcca |
39148054 |
T |
|
| Q |
138 |
ttaaccatgaatctaattgcatgaatttag |
167 |
Q |
| |
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| T |
39148053 |
atagccatgaatctaattgtataaatttag |
39148024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 1168347 - 1168299
Alignment:
| Q |
143 |
catgaatctaattgcatgaatttagaatatcatatataaagataagaag |
191 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1168347 |
catgcatctaattgcaagaatttagaatatcatatataaagataagaag |
1168299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 13602025 - 13602082
Alignment:
| Q |
41 |
gaaataaatgaaatgctttaatgtcacatattagaatagattaaacatcataacaata |
98 |
Q |
| |
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|||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||| |
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|
| T |
13602025 |
gaaacaaatgaaaaactctaatgtcacattttagaatatattacacatcataacaata |
13602082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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