View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_179 (Length: 213)
Name: NF3820_low_179
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_179 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 41785410 - 41785589
Alignment:
| Q |
20 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
119 |
Q |
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| T |
41785410 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
41785509 |
T |
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| Q |
120 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctattgatga |
199 |
Q |
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| T |
41785510 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatga |
41785589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 10834629 - 10834795
Alignment:
| Q |
20 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccg-cttgttgcaccagaggatccacgtagcagaacaattgaacaatga |
118 |
Q |
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| T |
10834629 |
gaaaatggaagaattggcaggagattttagatagagaatggaaaacaatatagggcttgttgcactagaggatccatttggcagaacagctgaacaatga |
10834728 |
T |
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| Q |
119 |
gaacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaa |
185 |
Q |
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| T |
10834729 |
aaacaaaaacagttgcaaattaacaaagttaaggtatgagcaagagaacaagattctgggagagaaa |
10834795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 2281576 - 2281450
Alignment:
| Q |
52 |
agaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagcagttgcaaattaacaaagataag |
151 |
Q |
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||||||||||||| ||||| | | ||||| | |||||||||||||||||||||| |||| || || |||||| ||||| |||||| |||||| || |
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| T |
2281576 |
agaaaatggaagataatatacatatattgcatcggaggatccacgtagcagaacaactgaataacgaaaacaaacacagttacaaattgacaaagcaaaa |
2281477 |
T |
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| Q |
152 |
gtacgaggaagagaacaagattcttgg |
178 |
Q |
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||| |||||||||||||| || ||||| |
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| T |
2281476 |
gtatgaggaagagaacaaaatgcttgg |
2281450 |
T |
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