View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_18 (Length: 500)
Name: NF3820_low_18
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 1837267 - 1836793
Alignment:
| Q |
17 |
cataggcgaatcattaatcgcttgaatttgacttggagagagtctgaccctcagaggcgccaccgcatcagtggaactggctgagc---ctgttccactg |
113 |
Q |
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| T |
1837267 |
cataggcgaatcgttaatcgcttgaatttgacttggagagagtctgaccctcagaggcgccaccgcatcagtggaactggctgagcagcctgttccactg |
1837168 |
T |
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| Q |
114 |
ttgttatctggtggcgccaacatgttgg------ctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggac |
207 |
Q |
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| T |
1837167 |
ttgttatctagtggcgccaacatgttggtgttggctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggac |
1837068 |
T |
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| Q |
208 |
gaggaagagtgtttgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgt |
307 |
Q |
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| T |
1837067 |
gaggaagagtgtttgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgt |
1836968 |
T |
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| Q |
308 |
ctcgaaacttcctaaccagattcttgttttggtgccgggctcacgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836967 |
ctcgaaacttcctaaccagattcttgttttggtgccgggctcgcgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaa |
1836868 |
T |
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| Q |
408 |
ctagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatataattatgtccatgtt |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
1836867 |
ctagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatatatttatgtcaatgtt |
1836793 |
T |
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