View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_20 (Length: 495)
Name: NF3820_low_20
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 263 - 477
Target Start/End: Original strand, 2914529 - 2914739
Alignment:
| Q |
263 |
cttggtcgtttaggtttttgttcttttgcaaacatgcgtctgccaacaaagagagtcgattacaaggtaggagacaaagtagaagtattatgcagcaaag |
362 |
Q |
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| T |
2914529 |
cttgctcgtttaggtttttgttcttttgcaaacatgcgtccgccaacaaagagagtcgattacaaggtaggagacaaagtagaag---tatgcagcaaag |
2914625 |
T |
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| Q |
363 |
aagatgggcttgtaggttcttactatgaagacacaatcgtttcatgtcttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatga |
462 |
Q |
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| T |
2914626 |
aagatgggctcgtaggttcttactatgaaggcacaatcg-ttcatgtcttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatga |
2914724 |
T |
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| Q |
463 |
tgagtctgaacttct |
477 |
Q |
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||||||||||||||| |
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| T |
2914725 |
tgagtctgaacttct |
2914739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 2914322 - 2914489
Alignment:
| Q |
60 |
atataaaatccg-aatattagaatttagaaacaatcaagcgcgannnnnnnaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
158 |
Q |
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| T |
2914322 |
atataaaatccccaatattagaatttagaaacaatcaagcgcgatttttttaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
2914421 |
T |
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| Q |
159 |
atttacaagttata--attttcttccaaaa-atctcaatcccaaataacgctcaactaaacaacttca |
223 |
Q |
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| T |
2914422 |
atttacaagttataatattttcttccaaaagatctcaatcccaaataacactcacctaaacaacttca |
2914489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2914087 - 2914137
Alignment:
| Q |
18 |
taccgaaaattcagcaaacttaatcccaaaattgtcgcataaatataaaat |
68 |
Q |
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| T |
2914087 |
taccgaaaattcagcaaacttaatcctaaaattgtcgcataaatataaaat |
2914137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 478
Target Start/End: Complemental strand, 38743772 - 38743611
Alignment:
| Q |
311 |
aagagagtcgattacaaggtaggagacaaagtagaagtattatgcagcaaagaagatgggcttgtaggttcttactatgaagacacaatcgtttcatgtc |
410 |
Q |
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| T |
38743772 |
aagagagttgattacaaggtaggagataaagtagaagtat---gcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtc |
38743676 |
T |
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| Q |
411 |
ttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctt |
478 |
Q |
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| T |
38743675 |
t---agagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaacttctt |
38743611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 478
Target Start/End: Original strand, 38782463 - 38782624
Alignment:
| Q |
311 |
aagagagtcgattacaaggtaggagacaaagtagaagtattatgcagcaaagaagatgggcttgtaggttcttactatgaagacacaatcgtttcatgtc |
410 |
Q |
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| T |
38782463 |
aagagagtagattataaggtaggagataaagtagaagtat---gcagcgaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtc |
38782559 |
T |
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| Q |
411 |
ttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctt |
478 |
Q |
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| T |
38782560 |
ttga---gagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttctt |
38782624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 478
Target Start/End: Original strand, 38788635 - 38788796
Alignment:
| Q |
311 |
aagagagtcgattacaaggtaggagacaaagtagaagtattatgcagcaaagaagatgggcttgtaggttcttactatgaagacacaatcgtttcatgtc |
410 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||||||||| |||| ||||| ||||| |||||||||| |
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| T |
38788635 |
aagagagttgattacaaggtaggagataaagttgaagtat---gcagcaaagaagaagggtttgtaggttcgtactttgaagctacaattgtttcatgtc |
38788731 |
T |
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| Q |
411 |
ttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctt |
478 |
Q |
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| T |
38788732 |
t---agagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaacttctt |
38788796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 478
Target Start/End: Complemental strand, 30963211 - 30963027
Alignment:
| Q |
288 |
ttgcaaacatgcgtctgccaacaaagagagtcgattacaaggtaggagacaaagtagaagtattatgcagcaaagaagatgggcttgtaggttcttacta |
387 |
Q |
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|||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||||| |||| || |||||||| ||| |||||||||| || | |
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| T |
30963211 |
ttgcaaccatgcgtccaccaatgaagagagtggattacaaggtaggagataaagtagaag---tatgtagtaaagaagaagggtttgtaggttcatattt |
30963115 |
T |
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| Q |
388 |
tgaagacacaatcgtttcatgtcttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctt |
478 |
Q |
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||||| |||||| |||||||| || |||||| || |||||| | |||| |||||||| ||||||||||| || || ||| |||||||| |
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| T |
30963114 |
tgaagccacaattgtttcatgcct---tgagagtggaaaatatgtgattcgttacaagaatcttcttaaagacgacgaatctcaacttctt |
30963027 |
T |
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