View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_25 (Length: 467)

Name: NF3820_low_25
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_25
NF3820_low_25
[»] chr2 (5 HSPs)
chr2 (19-461)||(10943089-10943529)
chr2 (19-461)||(10948958-10949398)
chr2 (177-324)||(6860201-6860348)
chr2 (27-144)||(10919535-10919649)
chr2 (237-335)||(12555636-12555734)
[»] chr7 (1 HSPs)
chr7 (142-335)||(31957171-31957367)
[»] chr8 (1 HSPs)
chr8 (149-403)||(24329422-24329678)
[»] chr4 (5 HSPs)
chr4 (142-402)||(1479409-1479671)
chr4 (142-323)||(6969361-6969542)
chr4 (142-227)||(1310952-1311037)
chr4 (250-339)||(49407345-49407435)
chr4 (142-214)||(49407252-49407324)
[»] chr1 (2 HSPs)
chr1 (210-402)||(33314842-33315034)
chr1 (234-283)||(39839859-39839908)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 10943529 - 10943089
Alignment:
Q  19 gcattcacccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacagcatcaaaaaatgcattcaac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||    
T  10943529 gcattcacccatgcaaccaatacgcaatcgcagaaaacacatactagattagtggcattaaaaaaaactgcaagaaacagcatcaaaaaatgcattcaac 10943430  T
Q  119 aacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10943429 aacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaaggtctaacacccattgcaga 10943330  T
Q  219 gctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatac 318  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  10943329 gctgtgtgtaaagctacgacctccaccacatcaacatcacacaggggagcaaactaatccgttttggccaacacaaattcaccaacatcatacctaatac 10943230  T
Q  319 acattccaaagcctaccctgtcaatcaacatagagaaggatgccaatgttacatttatacctgctagctgccggccttttccattccctcctctttacaa 418  Q
    ||||||||||||||||| ||| || | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||| ||    
T  10943229 acattccaaagcctaccttgttaagcgacatagagaaggatgccaatgttacatttacacccgctagctgccggccttttccatt--ctcctctttataa 10943132  T
Q  419 cttacaaatgcttgccgtgttgtgtttgtatttcctttgcttc 461  Q
    |||||| ||||||| ||||||| ||||||||||||||| ||||    
T  10943131 cttacagatgcttgtcgtgttgggtttgtatttcctttacttc 10943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 10949398 - 10948958
Alignment:
Q  19 gcattcacccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacagcatcaaaaaatgcattcaac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||    
T  10949398 gcattcacccatgcaaccaatacgcaatcgcagaaaacacatactagattagtggcattaaaaaaaactgcaagaaacagcatcaaaaaatgcattcaac 10949299  T
Q  119 aacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10949298 aacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaaggtctaacacccattgcaga 10949199  T
Q  219 gctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatac 318  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  10949198 gctgtgtgtaaagctacgacctccaccacatcaacatcacacaggggagcaaactaatccgttttggccaacacaaattcaccaacatcatacctaatac 10949099  T
Q  319 acattccaaagcctaccctgtcaatcaacatagagaaggatgccaatgttacatttatacctgctagctgccggccttttccattccctcctctttacaa 418  Q
    ||||||||||||||||| ||| || | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||| ||    
T  10949098 acattccaaagcctaccttgttaagcgacatagagaaggatgccaatgttacatttacacccgctagctgccggccttttccatt--ctcctctttataa 10949001  T
Q  419 cttacaaatgcttgccgtgttgtgtttgtatttcctttgcttc 461  Q
    |||||| ||||||| ||||||| ||||||||||||||| ||||    
T  10949000 cttacagatgcttgtcgtgttgggtttgtatttcctttacttc 10948958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 6860348 - 6860201
Alignment:
Q  177 aagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaat 276  Q
    |||||||  |||| ||||||||||||||| | ||||| |||||||||||||||| | ||| | ||| | |||||||||||||| |||||||||||| |||    
T  6860348 aagtccatgttgtcgaattgaaggtctaagacccattacagagctgtgtgtaaaccaacggcttcccctacatcaacatcacataggggagcaaactaat 6860249  T
Q  277 ccgttttggccagcacaagttcaccaacatcatacctaatacacattc 324  Q
    | ||||||||| ||  || ||||||| ||||||  ||||| |||||||    
T  6860248 ctgttttggcccgcctaaattcaccagcatcattactaatgcacattc 6860201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 10919649 - 10919535
Alignment:
Q  27 ccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacagcatcaaaaaatgcattcaacaacatcaa 126  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||||         |||||||||||||||| ||||||||||||||| ||||||||    
T  10919649 ccatgcaaccaaaacgcaatcgcacaaaagacatactagattagaggcat--aaaaaaactgcaagaaacagcat-aaaaaatgcattcaataacatcaa 10919553  T
Q  127 ataaattgctagatataa 144  Q
    ||||||| | ||||||||    
T  10919552 ataaattaccagatataa 10919535  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 12555636 - 12555734
Alignment:
Q  237 acctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctacc 335  Q
    |||||| ||||||| |||||||| || |||||||||||| ||||||| || || || |  |||||||||||||  ||||||||||| || |||||||||    
T  12555636 acctcctccacatcgacatcacaaagaggagcaaaccaagccgttttagcaagaacgaactcaccaacatcatttctaatacacatccccaagcctacc 12555734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 142 - 335
Target Start/End: Original strand, 31957171 - 31957367
Alignment:
Q  142 taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgtaaagctacgacctc 241  Q
    |||| ||||||||||||  |||||||| ||||   ||||||||||||| ||||||||||||||||| |||||| |||||||||| |||| ||| ||||||    
T  31957171 taacgtgatcaacaactgttttagaatcaaggacaaagtccacattgtcgaattgaaggtctaacacccattgtagagctgtgtataaacctatgacctc 31957270  T
Q  242 cgcc-acatcaac--atcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctacc 335  Q
    | || ||||||||  |||||||||||||||||||||||| |||||||||| || || ||||||| |||||| ||||||||||||||| |||||||||    
T  31957271 cccccacatcaacgcatcacacaggggagcaaaccaatctgttttggccaacataaattcaccagcatcattcctaatacacattcccaagcctacc 31957367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 149 - 403
Target Start/End: Original strand, 24329422 - 24329678
Alignment:
Q  149 atcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgtaaagctacgacctccgccaca 248  Q
    ||||||||||| ||||||||  || |  ||||| ||||||| ||||||||||| | ||| ||||||||| |||||||||| | | ||| | ||| ||| |    
T  24329422 atcaacaactcttttagaatccagtgcaaagtcaacattgtcgaattgaaggtttgacacccattgcagcgctgtgtgtagaccaacggcttcccccaga 24329521  T
Q  249 tcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctaccctgtcaatcaaca 348  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||| |  ||||||| |||||| |||||||| ||||   || |||  | | ||     
T  24329522 tcaacatcacacagtggagcaaaccaatccgttttggccagcacaaattccctgacatcattcctaatgcacattcccaagcaatccatgtttagcgacg 24329621  T
Q  349 tagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccatt 403  Q
     ||| || || ||  ||||||||||||||||||||| |||||||||| |||| ||||    
T  24329622 aagaaaaagacgcatcaatgttacatttatacctgccagctgccggcttttttcatt 24329678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 402
Target Start/End: Original strand, 1479409 - 1479671
Alignment:
Q  142 taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgtaaagctacgacctc 241  Q
    |||||||||||||||||| ||||||||  || | ||||||||| |||| ||||||||||||| | ||||||||||||| |||||||||| | |||   ||    
T  1479409 taacatgatcaacaactcttttagaatctagagcgaagtccacgttgtcgaattgaaggtctgagatccattgcagagttgtgtgtaaaccaacggtttc 1479508  T
Q  242 cgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctaccctgtca 341  Q
    |   | ||||||||| || | ||||||||||||||||||||||| | |||||| ||||||| |||||| |||||| || ||||| || |||||  ||| |    
T  1479509 ccttagatcaacatcgcataagggagcaaaccaatccgttttggaccgcacaaattcaccagcatcattcctaatgcatattcccaatcctacaatgtta 1479608  T
Q  342 atcaacatagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccat 402  Q
    | |||   ||| || |||||  |||| ||||||||||||||||  ||||||||  ||||||||    
T  1479609 agcaatgaagaaaatgatgcagcaatattacatttatacctgcccgctgccggttttttccat 1479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 6969542 - 6969361
Alignment:
Q  142 taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgtaaagctacgacctc 241  Q
    |||||||||||||||||  ||||||||  || |  ||||| || |||| ||||||||||||  | | ||||||||||| |||||||||| | | | | |     
T  6969542 taacatgatcaacaacttttttagaatccagagcaaagtctacgttgtcgaattgaaggtccgagacccattgcagagttgtgtgtaaaccaatggcttt 6969443  T
Q  242 cgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacatt 323  Q
    | | |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| | |||||| ||| || ||||||    
T  6969442 ccctacatcaacatcacacaggggagcaaaccaatccgttttagcccgcacaaattcactagcatcattcctgatgcacatt 6969361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 1311037 - 1310952
Alignment:
Q  142 taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattgcagagctgtgtgt 227  Q
    |||||||||||||||||| |||||||| || || ||| ||||| ||||| ||||||||||||||||  ||||| ||||||||||||    
T  1311037 taacatgatcaacaactcgtttagaatcaaaggcgaaatccacgttgttaaattgaaggtctaacactcattggagagctgtgtgt 1310952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 49407345 - 49407435
Alignment:
Q  250 caacatcacacaggggagcaaaccaatccgttttggccagcac-aagttcaccaacatcatacctaatacacattccaaagcctaccctgt 339  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| || ||||||| ||||||   |||| |||||||| |||||||||||||    
T  49407345 caacatcacacatgggagcaagccaatccgttttggccaacacgaatttcaccagcatcatttataatgcacattcccaagcctaccctgt 49407435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 49407252 - 49407324
Alignment:
Q  142 taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgaaggtctaacatccattg 214  Q
    ||||||||| |||||||| ||||||||  || | ||||||||||||||||||||||| |||| ||| ||||||    
T  49407252 taacatgattaacaactcttttagaatccagtgcgaagtccacattgttgaattgaaagtctgacacccattg 49407324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 402
Target Start/End: Complemental strand, 33315034 - 33314842
Alignment:
Q  210 cattgcagagctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcat 309  Q
    ||||||||||||||||  ||| | ||||| ||| | |||||||||| ||| | |||||||||||||||  |||||||| |||||| ||||||| ||||||    
T  33315034 cattgcagagctgtgt--aaaccaacgacttccccgacatcaacattacagaagggagcaaaccaatctattttggcccgcacaaattcaccagcatcat 33314937  T
Q  310 acctaatacacattccaaagcctaccctgtcaatcaacatagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccat 402  Q
     |||||| |||||||| || |||||||||  || | ||  ||| || ||| |  |||||||||||||||||||||  | ||||||| ||||||||    
T  33314936 tcctaatccacattcccaatcctaccctgataaacgacgaagaaaatgatccatcaatgttacatttatacctgcccgttgccggctttttccat 33314842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 39839908 - 39839859
Alignment:
Q  234 acgacctccgccacatcaacatcacacaggggagcaaaccaatccgtttt 283  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  39839908 acgacctcccccacatcaacatcacacagaggagcaaacaaatccgtttt 39839859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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