View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_26 (Length: 465)

Name: NF3820_low_26
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_26
NF3820_low_26
[»] chr5 (3 HSPs)
chr5 (19-420)||(35913217-35913618)
chr5 (322-387)||(9715745-9715809)
chr5 (367-407)||(28009847-28009887)
[»] chr1 (3 HSPs)
chr1 (337-400)||(34181829-34181892)
chr1 (345-400)||(15013546-15013601)
chr1 (368-400)||(36332631-36332663)
[»] chr7 (4 HSPs)
chr7 (333-407)||(29780161-29780235)
chr7 (345-407)||(32018133-32018195)
chr7 (367-407)||(8681898-8681938)
chr7 (368-400)||(21557037-21557069)
[»] chr6 (5 HSPs)
chr6 (368-400)||(12268820-12268852)
chr6 (368-400)||(5613402-5613434)
chr6 (345-401)||(19753632-19753688)
chr6 (368-400)||(28149814-28149846)
chr6 (117-157)||(29256451-29256491)
[»] chr3 (3 HSPs)
chr3 (137-207)||(50338411-50338486)
chr3 (333-407)||(44145137-44145211)
chr3 (117-161)||(43101380-43101424)
[»] chr2 (2 HSPs)
chr2 (368-407)||(23054340-23054379)
chr2 (369-407)||(4772820-4772858)
[»] chr8 (1 HSPs)
chr8 (337-397)||(41371184-41371242)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 35913618 - 35913217
Alignment:
Q  19 gcagtcacttaagtttcaccaaccgagcaaacagtcgactttggacataccgaagatatgatggccgaccacgagtcagggtggataaggataactttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  35913618 gcagtcacttaagtttcaccaaccgagcaaacagtcgactttggacataccgaagatatgatggccaaccacgagttagggtggataaggataactttct 35913519  T
Q  119 catccttacaaaaatgatttgtaaggtgatgagtgtctcctctaactcttatcaagaatcttatatatttgatatgaggcttgagtttt-cccagtacac 217  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||| |||| |||||    
T  35913518 catccttacaaaaatgacttataaggtgatgagtgtctcctctaactcttataaagagtcttatatattcgatatgagacttgagtttttcccaatacac 35913419  T
Q  218 cctctcacgcctagctagcattctttggtttggtgtggtgcgggtgcgtgtatgtatatagtgggcagtctgatcgatatgctttgatatcatgttgatt 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  35913418 cctctcacacctagctagcattctttggtttggtgtggtgcgggtgcgtgtatgtaaatagtgtgcagtctgatcgatatgctttgatatcatgttgatt 35913319  T
Q  318 atgtctaactcactattataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgtatcaagactt 417  Q
    |||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||    
T  35913318 atgtctaactcactattataaaatcagcttataatatgataaatgtcttttctttataaactcttatcacgagttatatccatctgatgtatc-agactt 35913220  T
Q  418 gag 420  Q
    |||    
T  35913219 gag 35913217  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 9715809 - 9715745
Alignment:
Q  322 ctaactcactattataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaa 387  Q
    |||||||| | |||||||||| | |||||| ||||||||| | || ||||||||||||||||||||    
T  9715809 ctaactcatttttataaaatcgatttgtaaggtgagaaattt-ttatctttataaactcttatcaa 9715745  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 28009847 - 28009887
Alignment:
Q  367 ttctttataaactcttatcaagagttatatctatatgatgt 407  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  28009847 ttctttataaactcttctcaagagttctatctatctgatgt 28009887  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 34181829 - 34181892
Alignment:
Q  337 aaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctat 400  Q
    ||||| ||||||||| |||||||||||||  | |||||||||| |||| |||||||||||||||    
T  34181829 aaaattaacttgtaaagtgagaaatgtctcatttttataaacttttattaagagttatatctat 34181892  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 15013601 - 15013546
Alignment:
Q  345 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctat 400  Q
    ||||||| ||||||| |||||| |||||||||||| || |||||||| ||||||||    
T  15013601 cttgtaaggtgagaagtgtcttctctttataaactgttctcaagagtcatatctat 15013546  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 36332663 - 36332631
Alignment:
Q  368 tctttataaactcttatcaagagttatatctat 400  Q
    ||||||||||||||||||||||||| |||||||    
T  36332663 tctttataaactcttatcaagagttctatctat 36332631  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 29780235 - 29780161
Alignment:
Q  333 ttataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 407  Q
    |||||||| | |||||||| ||||| | |||||  ||||||||||||||| |||||||| |||||||| ||||||    
T  29780235 ttataaaaccgacttgtaaggtgaggagtgtctcctctttataaactcttctcaagagtcatatctatttgatgt 29780161  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 32018133 - 32018195
Alignment:
Q  345 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 407  Q
    ||||||| ||||| | |||||  | |||||||||||||||||||||| |||||||| ||||||    
T  32018133 cttgtaaggtgaggagtgtctcatgtttataaactcttatcaagagtcatatctatttgatgt 32018195  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 8681938 - 8681898
Alignment:
Q  367 ttctttataaactcttatcaagagttatatctatatgatgt 407  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  8681938 ttctttataaactcttatcaagagtcttatctatctgatgt 8681898  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 21557069 - 21557037
Alignment:
Q  368 tctttataaactcttatcaagagttatatctat 400  Q
    ||||||||||||||||||||||||| |||||||    
T  21557069 tctttataaactcttatcaagagttctatctat 21557037  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 12268852 - 12268820
Alignment:
Q  368 tctttataaactcttatcaagagttatatctat 400  Q
    |||||||||||||||||||||||||||||||||    
T  12268852 tctttataaactcttatcaagagttatatctat 12268820  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 5613402 - 5613434
Alignment:
Q  368 tctttataaactcttatcaagagttatatctat 400  Q
    |||||||||||||||||||||| ||||||||||    
T  5613402 tctttataaactcttatcaagaattatatctat 5613434  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 19753632 - 19753688
Alignment:
Q  345 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctata 401  Q
    ||||||| ||||| | |||||| ||||||||||||||| ||||||||  ||||||||    
T  19753632 cttgtaaggtgaggagtgtcttctctttataaactcttctcaagagtcctatctata 19753688  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 28149846 - 28149814
Alignment:
Q  368 tctttataaactcttatcaagagttatatctat 400  Q
    ||||||||||||||||||||||||| |||||||    
T  28149846 tctttataaactcttatcaagagttttatctat 28149814  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 29256451 - 29256491
Alignment:
Q  117 ctcatccttacaaaaatgatttgtaaggtgatgagtgtctc 157  Q
    ||||||||||||||| ||||||||||||||| || ||||||    
T  29256451 ctcatccttacaaaactgatttgtaaggtgaggattgtctc 29256491  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 50338411 - 50338486
Alignment:
Q  137 ttgtaaggtgatgagtgtctcctcta-----actcttatcaagaatcttatatatttgatatgaggcttgagtttt 207  Q
    ||||||||||| || |||||||||||     ||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  50338411 ttgtaaggtgaagattgtctcctctatataaactcttatcaagagtcttatctatctgatatgagacttgagtttt 50338486  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 44145137 - 44145211
Alignment:
Q  333 ttataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 407  Q
    |||||||| |||||| ||| ||||| | |||||  |||||||||||| |||||||||||  ||||||| ||||||    
T  44145137 ttataaaaccaacttataaggtgagtattgtctcctctttataaactattatcaagagtcttatctatctgatgt 44145211  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 43101380 - 43101424
Alignment:
Q  117 ctcatccttacaaaaatgatttgtaaggtgatgagtgtctcctct 161  Q
    |||||||||||||||  |||||||||||||| ||||| |||||||    
T  43101380 ctcatccttacaaaaccgatttgtaaggtgaggagtgcctcctct 43101424  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 23054379 - 23054340
Alignment:
Q  368 tctttataaactcttatcaagagttatatctatatgatgt 407  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  23054379 tctttataaactcttctcaagagttatatctatctgatgt 23054340  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 4772820 - 4772858
Alignment:
Q  369 ctttataaactcttatcaagagttatatctatatgatgt 407  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  4772820 ctttataaactcttatcaagagtcatatctatctgatgt 4772858  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 41371184 - 41371242
Alignment:
Q  337 aaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatc 397  Q
    |||||||  |||||| ||||| ||||||||  |||||||||||||||||||||||| ||||    
T  41371184 aaaatcagtttgtaaggtgaggaatgtctt--ctttataaactcttatcaagagttctatc 41371242  T

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