View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_29 (Length: 457)
Name: NF3820_low_29
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 33412837 - 33413287
Alignment:
| Q |
19 |
tctaacccttcttgatttgatctaatactaatttgagggttcttggcttgaagccttttaatggctgacccacaaaata------------gaatggtta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33412837 |
tctaacccttcttgatttgatctaatactaatttgagggttcttggcttgaagccttttaatggctgacccacaaaattcgataaaaaattgaatggtta |
33412936 |
T |
|
| Q |
107 |
acacaattaaaatatgtgatatggttaattacgttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgcatgcaattaac |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412937 |
acacaattaaaatatgtggtatggttaattacgttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgcatgcaattaac |
33413036 |
T |
|
| Q |
207 |
tacgattttgagcactattaaccataattgtagtttagctttcctttttatacttttggtttagtcacaagacaaacctaaggtattcttccaacacttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33413037 |
tacgattttgagcactattaaccataattgtagtttagctttcctttttttacttttggtttagtcacaagacaaacctaaggtatttttccaacacttg |
33413136 |
T |
|
| Q |
307 |
atgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaagacatgcttttattatgctagaggagat----gc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
33413137 |
atgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttggcaagacatgcttttattatgctagaggagatatcacc |
33413236 |
T |
|
| Q |
403 |
atctccatatgaagaaaacattgttgatgaacgatatcctttcatctcact |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33413237 |
atctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcact |
33413287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 92 - 447
Target Start/End: Original strand, 33491345 - 33491706
Alignment:
| Q |
92 |
aaaatagaatggttaacacaattaaaatatgtgatatggttaat--tacgttcagtga-tggttaatgaatctaaaaagttgccgcaactc-gtttatca |
187 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| | | |||||| ||| || ||||| |||||| ||||| |||||||||| |||||||| |||||||| |
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|
| T |
33491345 |
aaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatggtta-tgaatataaaaagttgtcgcaactctgtttatca |
33491443 |
T |
|
| Q |
188 |
tccattgcatgcaattaactacgattttgagcactattaaccataattgtagtttagctttcctttttat--acttttggtttagtcacaagacaaacct |
285 |
Q |
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| T |
33491444 |
tccattgcacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttattttttttttacttttggtttacttacaagacaaacct |
33491542 |
T |
|
| Q |
286 |
aaggtattcttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcag-tttttgggaagacatgctttta |
384 |
Q |
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||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
33491543 |
aaggttttcttccaacacttgatgaggatcttctt-tatcttttacaagaaggatccaattcttgaatttccttcagttttttgggaagacatggtttta |
33491641 |
T |
|
| Q |
385 |
ttatgctagaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttcat |
447 |
Q |
| |
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||| || |||||||| ||||||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
33491642 |
tta--ctggaggagatatcaccatctccatctgaagaaaacattgttgatgaaagatatcatttcat |
33491706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 98 - 453
Target Start/End: Original strand, 33420059 - 33420427
Alignment:
| Q |
98 |
gaatggttaacacaattaaaatatgtgatatggttaattacgttcagtg-atggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgca |
196 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||| | || ||||||||||||| || |||| || |||||||| ||||||||| |||||| |
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| T |
33420059 |
gaatggttaacacaattaaattatgtgttatggttaattacgtttaatggatggttaatgaatatataaaggtgtcgcaactcatttatcatcaattgca |
33420158 |
T |
|
| Q |
197 |
tgcaattaactacgattttgagcactattaaccataattgtagtttagctt-tcctttttatacttttggtttagtcacaagacaaacctaaggtattct |
295 |
Q |
| |
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| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||||||||||||||| |
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| T |
33420159 |
cgtaattaactacaattttgagcactattaaccataattgtaatttagcttaatttttttttacttttggttcactcatgagacaaacctaaggtattct |
33420258 |
T |
|
| Q |
296 |
tccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaaga----catgcttttattatgct |
391 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| |||| |
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| T |
33420259 |
tccaacacttgatgaggatctccttatgtcttttacttgaaggatcaaattcttgaatttccttcggtttttggggagacatgcatgcttttattttgct |
33420358 |
T |
|
| Q |
392 |
---agaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttcatctcact |
453 |
Q |
| |
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||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||| ||||| |
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|
| T |
33420359 |
acaagaggagatatcaccatctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcact |
33420427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 353
Target Start/End: Complemental strand, 28812533 - 28812407
Alignment:
| Q |
229 |
cataattgtagtttagctttccttttta-tacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtc-t |
326 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||||||||| ||| | | ||| |||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
28812533 |
cataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtctt |
28812434 |
T |
|
| Q |
327 |
tttacaagaaggatccaattcttgaat |
353 |
Q |
| |
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||| | |||||||||||||||||||| |
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|
| T |
28812433 |
ttttcttgaaggatccaattcttgaat |
28812407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 28812368 - 28812259
Alignment:
| Q |
351 |
aatttccttcagtttttgggaagacatgcttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaacgatatcctt |
443 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||| | |||||||| ||||||||| ||||||||||||||| |||||| |||||| || |
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| T |
28812368 |
aatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt |
28812269 |
T |
|
| Q |
444 |
tcatctcact |
453 |
Q |
| |
|
|||| ||||| |
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|
| T |
28812268 |
tcatgtcact |
28812259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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