View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_30 (Length: 449)
Name: NF3820_low_30
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 36691213 - 36691612
Alignment:
| Q |
16 |
cataggattggaatatgtgtaggtcgcaaacggaacattagtattacttaaacaatcacttgtttggccaaatttcttccccttaatcagctcaaaaagc |
115 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691213 |
cataggattaggatatgtgtaggtcgcaaacggaacattagtattacttaaacaatcacttgtttggccaaatttcttccccttaatcagctcaaaaagc |
36691312 |
T |
|
| Q |
116 |
aaacaaccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36691313 |
aaacaaccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttgggct |
36691412 |
T |
|
| Q |
216 |
caaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691413 |
caaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgc |
36691512 |
T |
|
| Q |
316 |
aatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttca |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691513 |
aatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttca |
36691612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 83 - 415
Target Start/End: Original strand, 23654964 - 23655293
Alignment:
| Q |
83 |
ccaaatttcttccccttaatcagctcaaaaagcaaacaaccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataa |
182 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| | || |||||||||||||| |
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| T |
23654964 |
ccaaatttattcccattaatcagctcaaaaagcaaacaaccaaagtcagaaacatccttcttctcaagtcctatgtttttttccagatcattattcataa |
23655063 |
T |
|
| Q |
183 |
acatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatg |
282 |
Q |
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||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || ||||||| ||||| | |||||||||||||||||| |
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| T |
23655064 |
acatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaatttatattgagatggagcatatgcaagctatgatg |
23655163 |
T |
|
| Q |
283 |
gaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttcca |
382 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | || |||| || |||| | |||||| || ||||| |
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| T |
23655164 |
gaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagt---ttctttcagcttatcagatagccttcca |
23655260 |
T |
|
| Q |
383 |
tttgaaatgtattgatacaccaaaactctttca |
415 |
Q |
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||||| ||||||||||||||||||| ||||||| |
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| T |
23655261 |
tttgacatgtattgatacaccaaaattctttca |
23655293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 83 - 415
Target Start/End: Complemental strand, 23803606 - 23803277
Alignment:
| Q |
83 |
ccaaatttcttccccttaatcagctcaaaaagcaaacaaccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataa |
182 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| | || |||||||||||||| |
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| T |
23803606 |
ccaaatttattcccattaatcagctcaaaaagcaaacaaccaaagtcagaaacatccttcttctcaagtcctatgtttttttccagatcattattcataa |
23803507 |
T |
|
| Q |
183 |
acatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatg |
282 |
Q |
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||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || ||||||| ||||| | |||||||||||||||||| |
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| T |
23803506 |
acatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaatttatattgagatggagcatatgcaagctatgatg |
23803407 |
T |
|
| Q |
283 |
gaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttcca |
382 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | || |||| || |||| | |||||| || ||||| |
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| T |
23803406 |
gaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagt---ttctttcagcttatcagatagccttcca |
23803310 |
T |
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| Q |
383 |
tttgaaatgtattgatacaccaaaactctttca |
415 |
Q |
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||||| ||||||||||||||||||| ||||||| |
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| T |
23803309 |
tttgacatgtattgatacaccaaaattctttca |
23803277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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