View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_32 (Length: 447)
Name: NF3820_low_32
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 7418822 - 7418390
Alignment:
| Q |
1 |
aacaaaacattaacaatttttactcttttggtgttggaagttcgagaagaaacgatgacaacaacaacaac---gacaacgtttctgtttcattttctga |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7418822 |
aacaaaacattaacaatttttactcttttggtgttggaagttcgagaagaaacgacgacaacaacaacaacaacgacaacgtttctgtttcattttctga |
7418723 |
T |
|
| Q |
98 |
tgaatcaacaagatttggtttaacagttatgaggtcttcaagtggtggtttaggtggtggtggaatgaactgtcaagattgtggtaaccaagctaagaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7418722 |
tgaatcaacaagatttggtttaacagttatgaggtcttcaagtggtggtttaggtggtggtggaatgaactgtcaagattgtggtaaccaagctaagaaa |
7418623 |
T |
|
| Q |
198 |
gattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaagtacttgggttccagctgctaaacgccgcg |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7418622 |
gattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaagtacttgggttccagctgctaaacgccgcg |
7418523 |
T |
|
| Q |
298 |
aacggcagcaacaactcacgtcgttgcagcaacaaaatcagcagcagcaacaacagtttcactcatcaagaagacacagagaaaatcaaaatgatccttc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7418522 |
aacggcagcaacaactcacgtcgttgcagcaacaaaatcagcagcagcaacaacagtttcactcatcaagaagacacagagaaaatcaaaatgatccttc |
7418423 |
T |
|
| Q |
398 |
tggagcttctggttctctaacttgtactccagt |
430 |
Q |
| |
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| T |
7418422 |
tggagcttctggttctctaacttgtactccagt |
7418390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 310
Target Start/End: Complemental strand, 52767712 - 52767556
Alignment:
| Q |
154 |
gtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtca |
253 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| || |||||||||||||||||||| |
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| T |
52767712 |
gtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgtca |
52767613 |
T |
|
| Q |
254 |
aactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
310 |
Q |
| |
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||| ||||| || |||||||||||||| |||||||||||||| ||||| || ||||| |
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| T |
52767612 |
aacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
52767556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 32482966 - 32483108
Alignment:
| Q |
168 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
32482966 |
tgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaaa |
32483065 |
T |
|
| Q |
268 |
gtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
310 |
Q |
| |
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| ||||||||||| ||| ||| |||||| ||||| || ||||| |
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| T |
32483066 |
gcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
32483108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 8101882 - 8102002
Alignment:
| Q |
168 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
267 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| ||| | ||||||||||||||||| |||||| |||| ||| | |||||||||||||| || | |
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| T |
8101882 |
tgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatgttaaga |
8101981 |
T |
|
| Q |
268 |
gtacttgggttccagctgcta |
288 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
8101982 |
gtacttgggttcctgctgcta |
8102002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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