View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_33 (Length: 444)
Name: NF3820_low_33
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 234 - 429
Target Start/End: Complemental strand, 46211737 - 46211542
Alignment:
| Q |
234 |
tatgtatacatgcacatgttgtagtccagaacagactggtcccgtgtaaaccttgcaggaaataaatgtagtatttattactgaggaacgaaagttgtta |
333 |
Q |
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| T |
46211737 |
tatgtatacatgcacatgttgtagtccagaacagactggtcccgtgtaaaccttgcaggaaataaatgtagtatttattactgaggaacgaaagttgtta |
46211638 |
T |
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| Q |
334 |
gcacataatgaatgagcattaatttagtgaaaataagacaagttgtatggttcattatctttaatgcttttatatagtactactactagttcttta |
429 |
Q |
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| T |
46211637 |
gcacataatgaatgagcattaatttagtgaaaataagacaagttgtatggttcattttctttaatgcttttatatagtactactactagttcttta |
46211542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46211920 - 46211735
Alignment:
| Q |
1 |
tactcaattatttgtgttgaacttgcactatactcatcnnnnnnn-cactatgcatagtgtaatcttccattgaaatttttcatatacatttactgtgat |
99 |
Q |
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| T |
46211920 |
tactcaattatttgtgttgaacttgcactatactcatcttttttttcactatgcatagtgtaatcttccattgaaatttttcatatacatttactgtgat |
46211821 |
T |
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| Q |
100 |
atgattgtatgatactgagatatgctaactaaatatttaaaatgttactatgttagaaaataatggtttattggttcatgctttat |
185 |
Q |
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| T |
46211820 |
atgattgtatgatactgagatatgctaactaaatatttaaaatgttactatgttagaaaataatggtttattggttcctgctttat |
46211735 |
T |
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