View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_34 (Length: 441)

Name: NF3820_low_34
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_34
NF3820_low_34
[»] chr4 (2 HSPs)
chr4 (19-427)||(52364427-52364835)
chr4 (19-429)||(42492351-42492761)
[»] chr5 (3 HSPs)
chr5 (19-429)||(9935417-9935827)
chr5 (21-429)||(6696460-6696865)
chr5 (318-407)||(5665710-5665800)
[»] chr1 (4 HSPs)
chr1 (19-429)||(39345655-39346065)
chr1 (318-428)||(22908135-22908246)
chr1 (319-429)||(6911207-6911316)
chr1 (318-423)||(21529753-21529859)
[»] chr7 (6 HSPs)
chr7 (216-355)||(9972979-9973118)
chr7 (318-421)||(13323823-13323927)
chr7 (393-429)||(9972950-9972986)
chr7 (319-428)||(33378556-33378664)
chr7 (319-427)||(27214096-27214203)
chr7 (319-427)||(48160814-48160921)
[»] chr2 (3 HSPs)
chr2 (19-207)||(21935843-21936021)
chr2 (298-406)||(21935703-21935811)
chr2 (243-281)||(21935804-21935842)
[»] chr8 (3 HSPs)
chr8 (318-428)||(10644178-10644289)
chr8 (318-423)||(17506909-17507015)
chr8 (319-429)||(32661175-32661284)
[»] chr6 (1 HSPs)
chr6 (318-423)||(21506151-21506257)
[»] scaffold0697 (1 HSPs)
scaffold0697 (318-423)||(710-815)
[»] chr3 (1 HSPs)
chr3 (318-382)||(27426914-27426979)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 52364835 - 52364427
Alignment:
Q  19 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52364835 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattgacatcatttacatgtggttac 52364736  T
Q  118 ttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 217  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52364735 ttgctgattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 52364637  T
Q  218 ggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52364636 ggaattacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaagaacaaaactat 52364537  T
Q  318 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52364536 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgggaataaattgtgtatccatgaaac 52364437  T
Q  418 aaacgcaccc 427  Q
    ||||||||||    
T  52364436 aaacgcaccc 52364427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 42492351 - 42492761
Alignment:
Q  19 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42492351 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttac 42492450  T
Q  118 ttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42492451 ttgctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 42492549  T
Q  218 ggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 317  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42492550 ggaattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 42492649  T
Q  318 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  42492650 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgagaataaattgtgtatccatgaaac 42492749  T
Q  418 aaacgcacccta 429  Q
    ||||||||||||    
T  42492750 aaacgcacccta 42492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 9935827 - 9935417
Alignment:
Q  19 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9935827 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttac 9935728  T
Q  118 ttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935727 ttgctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 9935629  T
Q  218 ggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 317  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935628 ggaattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 9935529  T
Q  318 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 417  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||    
T  9935528 ttaaccaaacacttttttcatattttcctaagaataaaaatcacacctttatatttcagggaaagataattcctaggaataaattgtgtatccataaaac 9935429  T
Q  418 aaacgcacccta 429  Q
    ||||||||||||    
T  9935428 aaacgcacccta 9935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 6696460 - 6696865
Alignment:
Q  21 tttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6696460 tttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttactt 6696559  T
Q  120 gctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattgg 219  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  6696560 gctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggta---ttgg 6696655  T
Q  220 aattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactattt 319  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6696656 aattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactattt 6696755  T
Q  320 aaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6696756 aaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctaggaataaattgtgtatccatgaaacaa 6696855  T
Q  420 acgcacccta 429  Q
    ||||||||||    
T  6696856 acgcacccta 6696865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 5665800 - 5665710
Alignment:
Q  318 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgta 407  Q
    |||||||||||||||||||  ||||||||| |||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| ||||    
T  5665800 ttaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgta 5665710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 39345655 - 39346065
Alignment:
Q  19 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttac 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  39345655 gctttattgtctacatggactagactccattttcgtaaagcatatgcataaaaataacaatgcagaaaggatcggattgacatcatttacatgtggttac 39345754  T
Q  118 ttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 217  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39345755 ttgctgattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaatt 39345853  T
Q  218 ggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactat 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39345854 ggaattacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattctcagtttcttttttaataaaattcccaggaacaaaactat 39345953  T
Q  318 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  39345954 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagaaaaagataattcctgggaataaattgtgtatccatgaaac 39346053  T
Q  418 aaacgcacccta 429  Q
    ||||||||||||    
T  39346054 aaacgcacccta 39346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 428
Target Start/End: Original strand, 22908135 - 22908246
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    |||| |||||||||||||| |||||||||| ||||||||| |   ||||| | |||||  |||||| |||| |||||||||||||| |||| || | |||    
T  22908135 ttaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaa 22908234  T
Q  417 caaacgcaccct 428  Q
    ||||||| ||||    
T  22908235 caaacgccccct 22908246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 429
Target Start/End: Complemental strand, 6911316 - 6911207
Alignment:
Q  319 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 418  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  6911316 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 6911218  T
Q  419 aacgcacccta 429  Q
    ||| |||||||    
T  6911217 aacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 21529859 - 21529753
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | |||    
T  21529859 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaa 21529760  T
Q  417 caaacgc 423  Q
    |||||||    
T  21529759 caaacgc 21529753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 9973118 - 9972979
Alignment:
Q  216 ttggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973118 ttggaattacatcattcatctccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 9973019  T
Q  316 atttaaccaaacacttttttcatattttcctaggaataaa 355  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9973018 atttaaccaaacacttttttcatatttttctaggaataaa 9972979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 13323927 - 13323823
Alignment:
Q  318 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    |||||||||||||||||||  |||||||||||||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| |||| || | |||    
T  13323927 ttaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgtaaccctcaaa 13323828  T
Q  417 caaac 421  Q
    |||||    
T  13323827 caaac 13323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
Q  393 ggaataaattgtgtatccatgaaacaaacgcacccta 429  Q
    |||||||||||||||||||||||||||||||||||||    
T  9972986 ggaataaattgtgtatccatgaaacaaacgcacccta 9972950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 33378664 - 33378556
Alignment:
Q  319 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 418  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  33378664 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 33378566  T
Q  419 aacgcaccct 428  Q
    ||| ||||||    
T  33378565 aacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 27214096 - 27214203
Alignment:
Q  319 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 418  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  27214096 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 27214194  T
Q  419 aacgcaccc 427  Q
    ||| |||||    
T  27214195 aacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 48160814 - 48160921
Alignment:
Q  319 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 418  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  48160814 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 48160912  T
Q  419 aacgcaccc 427  Q
    ||| |||||    
T  48160913 aacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 21936021 - 21935843
Alignment:
Q  19 gctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatc-------gattgacatcatttacatgt 111  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  21936021 gctttattgtctacatgaactacgctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattcggattgacatcatttacatgt 21935922  T
Q  112 ggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaac 207  Q
    |||||||||||||||||||||  |||||||||||              |||||| | |||||||||||||||||||||||||||||||||||||||    
T  21935921 ggttacttgctgattgatttc--tgaatgtttct--------------ttttccga-ttcatgtttaattagttggttttctatttcttattaaac 21935843  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 298 - 406
Target Start/End: Complemental strand, 21935811 - 21935703
Alignment:
Q  298 attcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  21935811 attcccaggaacaaaactatttaaccaaacacttttttcatatttttctagaaataaaaatcacacctttatatttcagggaaagataattcctgagaat 21935712  T
Q  398 aaattgtgt 406  Q
    |||||||||    
T  21935711 aaattgtgt 21935703  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 21935842 - 21935804
Alignment:
Q  243 acaaattttgcaatacaaacacatttcaattattcccag 281  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21935842 acaaattttgcaatccaaacacatttcaattattcccag 21935804  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 428
Target Start/End: Original strand, 10644178 - 10644289
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| ||||||| || |||| |||| |||||||||| ||| |||| || | |||    
T  10644178 ttaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgatacctgggaatagattttgtaaccctcaaa 10644277  T
Q  417 caaacgcaccct 428  Q
    ||||||| ||||    
T  10644278 caaacgccccct 10644289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 17507015 - 17506909
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||||||||| ||| |||| || | |||    
T  17507015 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgggaatagattttgtaaccctcaaa 17506916  T
Q  417 caaacgc 423  Q
    |||||||    
T  17506915 caaacgc 17506909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 429
Target Start/End: Original strand, 32661175 - 32661284
Alignment:
Q  319 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 418  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  32661175 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 32661273  T
Q  419 aacgcacccta 429  Q
    ||| |||||||    
T  32661274 aacacacccta 32661284  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 21506151 - 21506257
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 416  Q
    ||||||||||||||||||| |||||||||||||||||||| |   ||||| | ||||| || |||| |||| |||||||||  ||| |||| || | |||    
T  21506151 ttaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaagttgatacctgggaatcgattttgtaaccctcaaa 21506250  T
Q  417 caaacgc 423  Q
    |||||||    
T  21506251 caaacgc 21506257  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 815 - 710
Alignment:
Q  318 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 417  Q
    |||||||||||||||||  ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | ||||    
T  815 ttaaccaaacactttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaac 716  T
Q  418 aaacgc 423  Q
    ||||||    
T  715 aaacgc 710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 27426914 - 27426979
Alignment:
Q  318 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaag 382  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| | |||||||||||||    
T  27426914 ttaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaaag 27426979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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