View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_37 (Length: 432)

Name: NF3820_low_37
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_37
NF3820_low_37
[»] chr8 (6 HSPs)
chr8 (10-367)||(19891947-19892304)
chr8 (26-367)||(19891394-19891735)
chr8 (236-416)||(19891138-19891318)
chr8 (139-367)||(19891674-19891899)
chr8 (38-106)||(19891375-19891443)
chr8 (38-110)||(19891924-19891996)
[»] chr7 (4 HSPs)
chr7 (10-367)||(11491868-11492225)
chr7 (26-362)||(11492444-11492780)
chr7 (26-367)||(11492164-11492505)
chr7 (238-410)||(11492863-11493035)
[»] chr6 (5 HSPs)
chr6 (10-367)||(24243174-24243531)
chr6 (26-367)||(24242894-24243235)
chr6 (236-416)||(24242348-24242528)
chr6 (35-105)||(24242876-24242946)
chr6 (26-87)||(24242397-24242458)
[»] chr4 (1 HSPs)
chr4 (136-223)||(30814312-30814399)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 19892304 - 19891947
Alignment:
10 catcatcaccaaggttctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtca 109  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
19892304 catcatcaccaaggtccttttggacttgagcagaaaagttgttgcttaatccatcgaacatagattggtccactagttaataaaatactcacatcagtaa 19892205  T
110 agtacaatacacgtnnnnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtca 209  Q
    ||||||||||| ||            ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||     
19892204 agtacaatacaagtaaaaacaaaaaactgcatcatgacattatcactttaaatagaattcgataaaactaaatgtgagaaaataaggaaaacaatggtcg 19892105  T
210 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||   |||| ||||||||||||| |||||| |||||||||||| |||| ||    
19892104 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacactttggagtaatcttttgcttcttggatggtctgtgattaacaaggtccatt 19892005  T
310 ttgtgttgagcagaaactttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
19892004 ttgtgttcagcagaaactttgttccttaatccattcatcatagagccgtccactagtt 19891947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 367
Target Start/End: Complemental strand, 19891735 - 19891394
Alignment:
26 ctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtcaagtacaatacacgtnn 125  Q
    |||||||||||||||| |||  |||||||| |||||||| | |||||| | ||||||||||||||||||||||||||||||| ||| |||||||| ||      
19891735 ctttttgatttgagcataaactttgttgcttaatccattcatcatagagtcgtccactagttaataaaatactcacatcagtaaagcacaatacaagtaa 19891636  T
126 nnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagttt 225  Q
              ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
19891635 aaacaaaaaactgcatcatgacattttcactttacatagaattcgacaaaactaaatgtgagaaagtaaggaaaacaatggtcacatgttttgttagttt 19891536  T
226 ccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaa 325  Q
    ||||| |||||||||||||||||| |||||| |||   |||| ||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||    
19891535 ccatatcatgtgcatttgatgtagtacttacactttggagtaatcttttgcttcttggatggtctgtgattaacaaggtccgttttgtgttcagcagaaa 19891436  T
326 ctttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
19891435 ctttgttccttaatccattcatcatagagccgtccactagtt 19891394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 19891318 - 19891138
Alignment:
236 tgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaactttgttgct 335  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| | ||||  ||||||||||| |||| |||||  ||||||||||||||||||| |    
19891318 tgcatttgatgtaccatttacgcttcagagtattcttttgcttcttgggtggtccgtgattaacaaggtcctttttgatttgagcagaaactttgttgtt 19891219  T
336 taatccattcatcatagagccgtccactagtttggcttttagacacatcaaacaaataaatatttagttcaagtctgtatc 416  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
19891218 taatccattcatcatagagccttccactagtttggcttttagacacatgaaacaaataaatatttagttcaagtcagtatc 19891138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 139 - 367
Target Start/End: Complemental strand, 19891899 - 19891674
Alignment:
139 catcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagtttccatagcatgtgc 238  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||||||||||  ||| || ||| ||||||||||||||||||| | |||  |  |||    
19891899 catcatgacattgtcagttaacatagaattcgccaaaaataaatgtgagaaaattgggaaaa-aattgtcacatgttttgttagttcctata--aactgc 19891803  T
239 atttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaactttgttgcttaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||  ||| |||||  ||||||| ||||||||||||||||    
19891802 atttgatgtagcacttacgcttcaaagtattcttttgcttcttggatggtccgtgatcaacaagttcctttttgatttgagcataaactttgttgcttaa 19891703  T
339 tccattcatcatagagccgtccactagtt 367  Q
    |||||||||||||||| ||||||||||||    
19891702 tccattcatcatagagtcgtccactagtt 19891674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 19891443 - 19891375
Alignment:
38 agcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcag 106  Q
    ||||||||  ||||| || |||||||| | ||||||   ||||||||||||||||| ||||||||||||    
19891443 agcagaaactttgttccttaatccattcatcatagagccgtccactagttaataaagtactcacatcag 19891375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 19891996 - 19891924
Alignment:
38 agcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtcaa 110  Q
    ||||||||  ||||| || |||||||| | ||||||   ||||||||||||||||| |||||||||||| |||    
19891996 agcagaaactttgttccttaatccattcatcatagagccgtccactagttaataaagtactcacatcagccaa 19891924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 11491868 - 11492225
Alignment:
10 catcatcaccaaggttctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtca 109  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
11491868 catcatcaccaaggtccttttggacttgagcagaaaagttgttgcttaatccattgaacatagattggtccactagttaataaaatactcacatcagtca 11491967  T
110 agtacaatacacgtnnnnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtca 209  Q
    ||||||||||| ||            |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| |||||||||||    
11491968 agtacaatacaagtaaaaacaaaaaactgcatcatgacattgtcacttgaaatagaattcgacaaaactcaatgtgagaaaataaggaaaacaatggtca 11492067  T
210 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||| ||||||   |||| |||||  ||| ||    
11492068 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacactttggagtattcttttgcttcttggatggtccatgatcaacaagttccttt 11492167  T
310 ttgtgttgagcagaaactttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    |||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
11492168 ttgatttgagcacaaactttgttgcttaatccattcatcatagagtcgtccactagtt 11492225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 362
Target Start/End: Original strand, 11492444 - 11492780
Alignment:
26 ctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtcaagtacaatacacgtnn 125  Q
    |||||||||||||||| |||  |||||||| |||||||| | || ||  | |||||||||||||||||||||||||||||||||||||||||||| ||      
11492444 ctttttgatttgagcataaactttgttgcttaatccattcatcaaagggtcgtccactagttaataaaatactcacatcagtcaagtacaatacaagtaa 11492543  T
126 nnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagttt 225  Q
              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||    
11492544 aaacaaaaaactgcatcatgacattgtcaatttacatagaattcgacaaaactaaatgtgagaaattaaggaaaacaatggtcacatgttttggtagttt 11492643  T
226 ccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaa 325  Q
    |||||||||||||||||||||||| |||||| |||   |||| ||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||    
11492644 ccatagcatgtgcatttgatgtagtacttacactttggagtaatcttttgcttcttggctggtttgtgattaacaaggtccgttttgtgttgagcagaaa 11492743  T
326 ctttgttgcttaatccattcatcatagagccgtccac 362  Q
    ||||||| |||||||||||||||||||||||||||||    
11492744 ctttgttccttaatccattcatcatagagccgtccac 11492780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 367
Target Start/End: Original strand, 11492164 - 11492505
Alignment:
26 ctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtcaagtacaatacacgtnn 125  Q
    |||||||||||||||| |||  |||||||| |||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||| | ||      
11492164 ctttttgatttgagcacaaactttgttgcttaatccattcatcatagagtcgtccactagttaataaaatactcacatcagtcaagtacaataaaagtaa 11492263  T
126 nnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagttt 225  Q
              |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
11492264 aaacaaaaaactgcatcatgacattgtcactttaaatagaattcgacaaaactaaatgtgagaaaataaggaaaacaatggtcacatgttttgttagttt 11492363  T
226 ccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaa 325  Q
    ||||||||||||||||||||||||||||||| |||   |||||||||||||||||| ||||||   |||| |||||  ||| |||||  ||||||| |||    
11492364 ccatagcatgtgcatttgatgtagcacttacactttggagtattcttttgcttcttggatggtccctgatcaacaagttcctttttgatttgagcataaa 11492463  T
326 ctttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    |||||||||||||||||||||||| || | ||||||||||||    
11492464 ctttgttgcttaatccattcatcaaagggtcgtccactagtt 11492505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 238 - 410
Target Start/End: Original strand, 11492863 - 11493035
Alignment:
238 catttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaactttgttgctta 337  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| | ||||  ||||||||||| |||| |||||  | ||||| |||||||||||||||    
11492863 catttgatgtaccacttacgcttcagagtattcttttgcttcttgggtggtccgtgattaacaaggtcctttttgattcgagcataaactttgttgctta 11492962  T
338 atccattcatcatagagccgtccactagtttggcttttagacacatcaaacaaataaatatttagttcaagtc 410  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
11492963 atccattcatgatagagccgtccactagtttggcttttagacacatgaaacaaataaatatttagttcaagtc 11493035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 24243531 - 24243174
Alignment:
10 catcatcaccaaggttctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtca 109  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
24243531 catcatcaccaaggtccttttggacttgagcagaaaagttgttgcttaatccgttgaacatagatttgtccactagttaataaaatactcacatcagtca 24243432  T
110 agtacaatacacgtnnnnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtca 209  Q
    ||||||||||| ||            |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
24243431 agtacaatacaagtaaaaacaaaaaactgcattatgacattgtcactttaaatagaattcgacaaaactaaatgtgagaaaataaggaaaacaatggtca 24243332  T
210 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||| ||||||   |||| |||||  ||| ||    
24243331 catgttttgttagtttccatagcatgtgcatttgatgtagcacttacactttggagtattcttttgcttcttggatggtccatgatcaacaagttccttt 24243232  T
310 ttgtgttgagcagaaactttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    |||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
24243231 ttgatttgagcataaactttgttgcttaatccattcatcatagagtcgtccactagtt 24243174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 367
Target Start/End: Complemental strand, 24243235 - 24242894
Alignment:
26 ctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatcagtcaagtacaatacacgtnn 125  Q
    |||||||||||||||| |||  |||||||| |||||||| | |||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||      
24243235 ctttttgatttgagcataaactttgttgcttaatccattcatcatagagtcgtccactagttaataaactactcacatcagtcaagtacaatacaagtaa 24243136  T
126 nnnnnnnnnnctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagttt 225  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
24243135 aaacaaaaaactgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaattaaggaaaacaatggtcacatgttttgttagttt 24243036  T
226 ccatagcatgtgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaa 325  Q
    ||||||||||||||||||||||||||||||| |||   |||| |||| |||||||| |||||| |||||||||||| ||| |||||||||||||||||||    
24243035 ccatagcatgtgcatttgatgtagcacttacactttggagtaatcttatgcttcttggatggtctgtgattaacaaggtctgttttgtgttgagcagaaa 24242936  T
326 ctttgttgcttaatccattcatcatagagccgtccactagtt 367  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
24242935 ctttgttccttaatccattcatcatagagccgtccactagtt 24242894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 24242528 - 24242348
Alignment:
236 tgcatttgatgtagcacttacgcttcaaagtattcttttgcttcttagatggtatgtgattaacaacgtccgttttgtgttgagcagaaactttgttgct 335  Q
    |||||||||||||  |||||||||||| |||||||||||||||||| | |||| |||||||||||| | || |||||  |||||||||||||||||||||    
24242528 tgcatttgatgtactacttacgcttcagagtattcttttgcttcttgggtggtctgtgattaacaaggccctttttgatttgagcagaaactttgttgct 24242429  T
336 taatccattcatcatagagccgtccactagtttggcttttagacacatcaaacaaataaatatttagttcaagtctgtatc 416  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
24242428 taatccattcatcatagagctgtccactagtttggcttttagacacatgaaacaaataaatatttagttcaagtcagtatc 24242348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 24242946 - 24242876
Alignment:
35 ttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagttaataaaatactcacatca 105  Q
    |||||||||||  ||||| || |||||||| | ||||||   ||||||||||||||||| |||||||||||    
24242946 ttgagcagaaactttgttccttaatccattcatcatagagccgtccactagttaataaagtactcacatca 24242876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 24242458 - 24242397
Alignment:
26 ctttttgatttgagcagaaaagttgttgctaaatccattgaacatagattggtccactagtt 87  Q
    ||||||||||||||||||||  |||||||| |||||||| | ||||||   |||||||||||    
24242458 ctttttgatttgagcagaaactttgttgcttaatccattcatcatagagctgtccactagtt 24242397  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 30814399 - 30814312
Alignment:
136 ctgcatcatgacattgtcactttacatagaattcgacaaaactaaatgtgagaaaataaggataacaatggtcacatgttttgttagt 223  Q
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30814399 ctgcgtcatgacattgtcacttcacaaagaattcgacagaaataaatgtgagaaaattgggggaaaaattgtgacatgttttgttagt 30814312  T

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