View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_38 (Length: 425)
Name: NF3820_low_38
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 411
Target Start/End: Original strand, 41932545 - 41932956
Alignment:
| Q |
4 |
aaaaatcatatgcaaagaagacaacatgaatgaata----aataaataagttcaaaataaaatgtacctccatgctcataatccattccggacaattggc |
99 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932545 |
aaaaatcatatgcaaagaagataacatgaatgaataaataaataaataagttcaaaataaaatgtacctccatgctcataatccattccggacaattggc |
41932644 |
T |
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| Q |
100 |
gccataaatgccgcattttactccctaaaacaagcaatatatatatttagcttgcatacacacaatacaagaaaagatactaatatgaggcaaaagatcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932645 |
gccataaatgccgcattttactccctaaaacaagcaatatatatatttagcttgcatacacacaatacaagaaaagatactaatatgaggcaaaagatcc |
41932744 |
T |
|
| Q |
200 |
cgtagtccttcatgacgaagctattcatgaagatctcaaagtgtaataacaagaatatataattgcaaaagagaaagaaattacgagaattttgaatttg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41932745 |
cgtagtccttcatgacgaagctattcatgaagatctcaaagtgtaataacaagaatatataattgtaaaagagaaagaaattacgagaattttgaatttg |
41932844 |
T |
|
| Q |
300 |
tttttggtatgcaaaacaatgcgtcacaaataacagaagaagtgagcaacacattatgtagtgagaatccaagaattgcagtgacaaatcaaagaagata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41932845 |
tttttggtatgcaaaacaatgcgtcacaaataacagaagaactgagcaacacattatgtagtgagaatccaggaattgcagtgacaaatcaaagaagata |
41932944 |
T |
|
| Q |
400 |
aaagagccttgt |
411 |
Q |
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|||||||||||| |
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| T |
41932945 |
aaagagccttgt |
41932956 |
T |
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Back To:
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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 2199905 - 2199830
Alignment:
| Q |
50 |
ttcaaaataaaatgtacctccatgctcataatccattccggacaattggcgccataaatgccgcattttactccct |
125 |
Q |
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| T |
2199905 |
ttcaaaataaaatgtacctccatgctcataatccactctgcagaattggcaccataaataccacattttacaccct |
2199830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 2212566 - 2212491
Alignment:
| Q |
50 |
ttcaaaataaaatgtacctccatgctcataatccattccggacaattggcgccataaatgccgcattttactccct |
125 |
Q |
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||||||||||||||||||||||||||||||||||| || | | ||||||| |||||||| || |||||||| |||| |
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| T |
2212566 |
ttcaaaataaaatgtacctccatgctcataatccactctgcagaattggcaccataaataccacattttacaccct |
2212491 |
T |
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