View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_43 (Length: 417)

Name: NF3820_low_43
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_43
NF3820_low_43
[»] chr5 (5 HSPs)
chr5 (50-398)||(43153122-43153470)
chr5 (311-399)||(43152201-43152289)
chr5 (34-101)||(19204620-19204687)
chr5 (15-54)||(43152905-43152944)
chr5 (50-99)||(3748420-3748469)
[»] chr6 (1 HSPs)
chr6 (33-190)||(3606279-3606435)
[»] chr3 (5 HSPs)
chr3 (39-200)||(52736116-52736278)
chr3 (49-192)||(53567382-53567526)
chr3 (34-101)||(33989681-33989748)
chr3 (127-208)||(33989574-33989654)
chr3 (41-99)||(42643795-42643853)
[»] chr1 (1 HSPs)
chr1 (34-101)||(7765903-7765970)
[»] chr7 (4 HSPs)
chr7 (34-160)||(4227883-4228009)
chr7 (39-101)||(38493745-38493807)
chr7 (125-200)||(37149154-37149229)
chr7 (39-100)||(45822467-45822528)
[»] chr2 (1 HSPs)
chr2 (34-160)||(42771217-42771343)
[»] chr4 (3 HSPs)
chr4 (41-98)||(1594090-1594147)
chr4 (127-175)||(5834501-5834549)
chr4 (39-102)||(20231506-20231569)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 50 - 398
Target Start/End: Original strand, 43153122 - 43153470
Alignment:
Q  50 aaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggttatatgtacttctgcttttgataaactcgattccaagaagttaggga 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43153122 aaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggttatatgtacttctgcttttgataaactcgattccaagaagctaggga 43153221  T
Q  150 gagcagcttctccaagaatcgattttgaggatgaaaacgtacgacggcggttgggtgttttggagaacgaaacacggttaaatcgcttttgacggataga 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  43153222 gagcagcttctccaagaatcgattttgaggatgaaaacgtacggcggcggttgggtgttttggagaaccaaacacggttaaatcgcttttgacgaataga 43153321  T
Q  250 acacacgtttaagtgtttttgccgggtaaacaaacacatactaaaaatagtcgtggagttagcaatattgagattctccatgtcgacgtatttcaattat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43153322 acacacgtttaagtgtttttgccgggtaaacaaacacatactaaaaatagtcgtggagttagcaatattgagattcttcatgtcgacgtatttcaattat 43153421  T
Q  350 ataagttgaatgtgtaaaatatgtattccgtttatataatttaaaatgt 398  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  43153422 ataagttgaatgtgtaaaatatgtattctgtttatataatttgaaatgt 43153470  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 43152201 - 43152289
Alignment:
Q  311 gcaatattgagattctccatgtcgacgtatttcaattatataagttgaatgtgtaaaatatgtattccgtttatataatttaaaatgtt 399  Q
    |||| |||||||||||  |||| ||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  43152201 gcaacattgagattctttatgttgacatatttcagttatataagttgaatgtgtaaaatatgtgatccgtttatataatttgaaatgtt 43152289  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 19204620 - 19204687
Alignment:
Q  34 ggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatgg 101  Q
    |||| |||||||| ||||||| |||||||||| |||| || |||||||||||||||||||||||||||    
T  19204620 ggatttgtcaaatttaaaaagatatgtgaaagaaagtgatgagattcaagggtaaaagagacaaatgg 19204687  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 43152905 - 43152944
Alignment:
Q  15 gagaaggagtaacatatttggatatgtcaaatataaaaag 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43152905 gagaaggagtaacatatttggatatgtcaaatataaaaag 43152944  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 3748469 - 3748420
Alignment:
Q  50 aaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaat 99  Q
    |||||||||||||||||||||  | ||||||||||| |||||||||||||    
T  3748469 aaaaggtatgtgaaaggaagtgttgagattcaagggcaaaagagacaaat 3748420  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 3606279 - 3606435
Alignment:
Q  33 tggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggttatatgtacttctgcttttgataaactcga 132  Q
    ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  | |||||||   | || |||| || |||    
T  3606279 tggatctgtcaaatataaaa-ggtatgtgaaaggaagtgacaagattcaagggtaaaagagacaaatggtgttgtgtactttcacgttggatagacacga 3606377  T
Q  133 ttccaagaagttagggagagcagcttctccaagaatcgattttgaggatgaaaacgta 190  Q
    || ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  3606378 tttcaagaagctagggagagcagcttctccaagaatcgattttgtagatgaaaacgta 3606435  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 52736278 - 52736116
Alignment:
Q  39 tgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatgg-ttatatgtacttctgcttttgataaactcgattcca 137  Q
    |||||||| ||||||||||| |||||| || | || ||||||| ||||||||||||||| ||| | ||||||||||||||  | || | | |||||| ||    
T  52736278 tgtcaaatttaaaaaggtatatgaaagaaactgatgagattcaggggtaaaagagacaattggatgatatgtacttctgcggtggaaagaatcgatttca 52736179  T
Q  138 agaagttagggagagcagcttctccaagaatcgattttgaggatgaaaacgtacgacggcggt 200  Q
    ||||| ||| |||||||||||||  || |||||||| ||| |  |||||||| ||||||||||    
T  52736178 agaagctagagagagcagcttctttaaaaatcgattctgaaggggaaaacgtgcgacggcggt 52736116  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 53567526 - 53567382
Alignment:
Q  49 aaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggtta-tatgtacttctgcttttgataaactcgattccaagaagttagg 147  Q
    ||||||| |||||||| ||||| || ||| ||||||| ||||||||||||| | || |||||||||| |   |||| |||||||||| ||||||| ||||    
T  53567526 aaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagg 53567427  T
Q  148 gagagcagcttctccaagaatcgattttgaggatgaaaacgtacg 192  Q
     | ||||||||||| ||||||| ||| ||| |||| |||| ||||    
T  53567426 aatagcagcttctctaagaatcaattctgaagatggaaacttacg 53567382  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 33989748 - 33989681
Alignment:
Q  34 ggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatgg 101  Q
    |||| ||||||||||||||||| |||| |||| |||| |||| |||||| ||||||||||||||||||    
T  33989748 ggatttgtcaaatataaaaaggaatgtaaaagaaagtgataaaattcaaaggtaaaagagacaaatgg 33989681  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 33989654 - 33989574
Alignment:
Q  127 actcgattccaagaagttagggagagcagcttctccaagaatcgattttgaggatgaaaacgtacgacggcggttgggtgtt 208  Q
    |||||||||||||||||||||||| ||| |||||  || |||||||| |||  ||| ||| ||||||||||||||| |||||    
T  33989654 actcgattccaagaagttagggagtgcatcttctataa-aatcgattctgaaaatgcaaatgtacgacggcggttgagtgtt 33989574  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 42643853 - 42643795
Alignment:
Q  41 tcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaat 99  Q
    |||||||||||||| ||||||||||||| | ||  |||||||||  |||||||||||||    
T  42643853 tcaaatataaaaagatatgtgaaaggaattgatgtgattcaaggacaaaagagacaaat 42643795  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 7765903 - 7765970
Alignment:
Q  34 ggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatgg 101  Q
    |||| |||||||| ||||||| |||||||||| |||| || |||||||||||||||||||||||||||    
T  7765903 ggatttgtcaaatttaaaaagatatgtgaaagaaagtgatgagattcaagggtaaaagagacaaatgg 7765970  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 4228009 - 4227883
Alignment:
Q  34 ggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggttatatgtacttctgcttttgataaactcgat 133  Q
    |||| ||||||||||||| || |||||||||  |||| || |||||||||||||||||||||||||||   |||||||||   |  | |  |||||||||    
T  4228009 ggatttgtcaaatataaacagatatgtgaaaaaaagtgatgagattcaagggtaaaagagacaaatggggctatgtactttcacggtagggaaactcgat 4227910  T
Q  134 tccaagaagttagggagagcagcttct 160  Q
    ||||| ||| |||||| ||||||||||    
T  4227909 tccaaaaagctagggaaagcagcttct 4227883  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 38493807 - 38493745
Alignment:
Q  39 tgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatgg 101  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  38493807 tgtcaaatttgaaaaggtatgtgaaaggaagtgttgagattcaagggtaaaagagacaaatgg 38493745  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 37149154 - 37149229
Alignment:
Q  125 aaactcgattccaagaagttagggagagcagcttctccaagaatcgattttgaggatgaaaacgtacgacggcggt 200  Q
    |||||||||| | ||||| |||| | ||||||||||| || |||| |||||||  ||| |||||||||||||||||    
T  37149154 aaactcgatttctagaagctaggaatagcagcttctctaaaaatcaattttgaaaatggaaacgtacgacggcggt 37149229  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 45822528 - 45822467
Alignment:
Q  39 tgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatg 100  Q
    ||||||||||||| ||  || |||||| |||| |||||||| ||||||| ||||||||||||    
T  45822528 tgtcaaatataaacagaaatttgaaagaaagtgataagatttaagggtagaagagacaaatg 45822467  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 42771217 - 42771343
Alignment:
Q  34 ggatatgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggttatatgtacttctgcttttgataaactcgat 133  Q
    |||| ||||||||||||| || |||||||||  |||| || |||||||||||||||||||||||||||   |||||||||   |  | |  ||||| |||    
T  42771217 ggatttgtcaaatataaacagatatgtgaaaaaaagtgatgagattcaagggtaaaagagacaaatgggactatgtactttcacggtagggaaactagat 42771316  T
Q  134 tccaagaagttagggagagcagcttct 160  Q
    ||||| ||| |||||||||||||||||    
T  42771317 tccaaaaagctagggagagcagcttct 42771343  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 1594090 - 1594147
Alignment:
Q  41 tcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaa 98  Q
    |||||||||||||||| ||||||||||||| || ||||||||||| ||||| ||||||    
T  1594090 tcaaatataaaaaggtttgtgaaaggaagtgatgagattcaagggcaaaagggacaaa 1594147  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5834549 - 5834501
Alignment:
Q  127 actcgattccaagaagttagggagagcagcttctccaagaatcgatttt 175  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||    
T  5834549 actcgattccaagaagctagggagagcagcttctataagaatcgatttt 5834501  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 20231569 - 20231506
Alignment:
Q  39 tgtcaaatataaaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggt 102  Q
    ||||||||||||| || ||||||||||||| | || ||| ||||||| |||| |||||||||||    
T  20231569 tgtcaaatataaagagttatgtgaaaggaactgatgagactcaagggcaaaatagacaaatggt 20231506  T

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