View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_46 (Length: 412)
Name: NF3820_low_46
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 46983766 - 46983380
Alignment:
| Q |
11 |
acaccgtctctttgcgctgaatctgtcccttggggtgatgcagaattagttgttggccatgaacgacttcttgtacctgttttaattgttgaagtaggat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46983766 |
acaccgtctctttgcgctgaatctgtcccttggggtgatgcagaattagttgttggccatgaacgacttcttgtacctgttttaattgttgaagtaggat |
46983667 |
T |
|
| Q |
111 |
tttcctcttgtttgcttagcagcgtacagaaggtagtttcatcaggatcttcaactggactgaatagaggacaatgctcattccatcttcctccatttcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46983666 |
tttcctcttgtttgcttagcagcgtacagaaggtagtttcatcaggatcttcaactggactgaatagaggacaatgctcattccatcttcctccatttcc |
46983567 |
T |
|
| Q |
211 |
gtccacatgttgcatcttttccaaccaacgaaaaacactgtattggagtatacatgctacaataaccgcaaccttccccctcaaccctgactctacacct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46983566 |
gtccacatgttgcatcttttccaaccaacgaaaaacactgtattggagtatacatgctacaataactgcaaccttccccctcaaccctgactctacacct |
46983467 |
T |
|
| Q |
311 |
ttaaaaccaggcttatacagctgtaagcccataagtaaggataactgaaagtgatcttgaccaggaaacatcgcagcctgatctccc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46983466 |
ttaaaaccaggcttatacagctgtaagcccataagtaaggataactgaaagtgatcttgaccaggaaacatctcagcctgatctccc |
46983380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 40180900 - 40180972
Alignment:
| Q |
222 |
gcatcttttccaaccaacgaaaaacactgtattggagtatacatgctacaataaccgcaaccttccccctcaa |
294 |
Q |
| |
|
||||| ||||||||||||| || ||| ||||||| || |||| || ||||||||| ||||||||||||||| |
|
|
| T |
40180900 |
gcatcctttccaaccaacggaatacattgtattgaagagtacaagccacaataaccagaaccttccccctcaa |
40180972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University