View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_47 (Length: 411)
Name: NF3820_low_47
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Complemental strand, 39956744 - 39956361
Alignment:
| Q |
21 |
atcataaattaattaatttt-atctatcatcatttatggcttccctctggtcattctcatcaatattcctagccttaatagcatgcaattgttcattagc |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956744 |
atcataaattaattaatttttatctatcatcatttatggcttccttttggtcattctcatcaatattcctagccttaatagcatgcaattgttcattagc |
39956645 |
T |
|
| Q |
120 |
tttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgtcaccagatatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956644 |
tttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgtcaccagatatg |
39956545 |
T |
|
| Q |
220 |
gagccactgtttccttcccctggaggagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaatccagatatct |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956544 |
gagccactgtttccttcccctggaggagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaatccagatatct |
39956445 |
T |
|
| Q |
320 |
caactcatcaaggtcctgtttcggcttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956444 |
caactcatcaaggtcctgtttcggcttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
39956361 |
T |
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