View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_49 (Length: 409)
Name: NF3820_low_49
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 9822165 - 9821784
Alignment:
| Q |
13 |
aatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaagtgatcgcaatttagacccatgacttgtcaagaatacaaacaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9822165 |
aatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaagtgatcgcaatttagacccatgacttgtcaagaatacaaacaatg |
9822066 |
T |
|
| Q |
113 |
cattatgaacaatcctctatgaattgaatccaaatgcaacaacaagccgaagaacttatacaatgtttaatttgaaaaatcaatcaat---aaaattaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9822065 |
cattatgaacaatcctctatgaattgaatccaaatgcaacaacaagccgaagaacttatacaatgtttaatttgaaaaatcaatcaataaaaaaattaca |
9821966 |
T |
|
| Q |
210 |
actaggtaaaccattcatataaaatccaaaattcaatttaagagacaaaaatcctgaacattcaaaacccctaaattaagatacacatatatagagttat |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821965 |
actaggtaaaccattcatagaaaatccaaaattcaatttaagagacaaaaatcctgaacattcaaaacccctaaattaagatacacatatatagagttat |
9821866 |
T |
|
| Q |
310 |
acgtaaaaccgcaattttcaaaatttgaatgcaatgtgcgaagctagaatcctcagtcgcgtcagtttagcgccgtacggag |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821865 |
acgtaaaaccgcaattttcaaaatttgaatgcaatgtgcgaagctagaatcctcagtcgcgtcagtttagcgccgtacggag |
9821784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 6275319 - 6275704
Alignment:
| Q |
13 |
aatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaa-gtgatcgcaatttagacccatgacttgtcaagaatacaaacaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6275319 |
aatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaccgtgatcgcaatttagacccatgacttgtcaagaatacaaacagt |
6275418 |
T |
|
| Q |
112 |
gcattatgaacaatcctctatgaattgaatccaaatgca---acaacaagccgaagaacttatacaatgtttaatttgaaaaatcaatcaataaaattac |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6275419 |
gcatcatgaacaatcctctatgaattgaatccaaatgcaccaacaacaagccgaagaacttatacaatgtttaattcgaaaaatcaatcaataaaattac |
6275518 |
T |
|
| Q |
209 |
aactaggtaaaccattcatataaaatccaaaattcaatttaagagacaaaaatcctgaacattcaaaacccctaaattaagatacac--atatatagagt |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6275519 |
aactaggtaaaccattcatagaaaatccaaaaatcaatttaagagacaaaaatcctgaacattcaaaacccctaaattaagatacacatatatatagagt |
6275618 |
T |
|
| Q |
307 |
tatacgtaaaaccgcaattttcaaaatttg-aatgcaatgtgcgaagctagaatcctcagtcgcgtcagtttagcgccgtacggag |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6275619 |
tatacgtaaaaccgcaattttcaaaatttgcaatgcaatgtgcgaagctagaatcctcaatcgcgtcagtttagcgccgtacggag |
6275704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 152 - 391
Target Start/End: Complemental strand, 35679074 - 35678835
Alignment:
| Q |
152 |
caacaagccgaagaacttatacaatgtttaatttgaaaaatcaatcaataaaattacaactaggtaaaccattcatataaaatccaaaattcaatttaag |
251 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35679074 |
caacaagctgaagaacttatacaa-cattaacttagaaaatcaatcaataaaagtataactaggtaaaccattcatagaaaatccaaaattcaatttaag |
35678976 |
T |
|
| Q |
252 |
agacaaaaatcctgaacattcaaaacccctaaattaagatacacatatatagagttatacgtaaaaccgcaattttcaaaatttg-aatgcaatgtgcga |
350 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||| ||| ||| ||||||||||||| |||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
35678975 |
agacaaaaatcctaaaatttcaaaaaccctaaattaaaatatacacatatagagttatatgtaaaagcgtaattttcaaaatttgcaatgcaatgtgcga |
35678876 |
T |
|
| Q |
351 |
agctagaatcctcagtcgcgtcagtttagcgccgtacggag |
391 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||| |||| |
|
|
| T |
35678875 |
agctagaatccacaatcgcgtcagtttagcgcggtatggag |
35678835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University