View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_51 (Length: 403)

Name: NF3820_low_51
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_51
NF3820_low_51
[»] chr3 (12 HSPs)
chr3 (13-359)||(30056924-30057270)
chr3 (209-359)||(30045383-30045534)
chr3 (196-359)||(30174601-30174762)
chr3 (238-359)||(30155520-30155642)
chr3 (198-359)||(30458280-30458441)
chr3 (56-192)||(814354-814492)
chr3 (20-173)||(18088068-18088219)
chr3 (65-169)||(42531318-42531422)
chr3 (92-192)||(46691454-46691553)
chr3 (109-192)||(814266-814348)
chr3 (100-160)||(50294694-50294754)
chr3 (87-160)||(16463005-16463077)
[»] chr6 (8 HSPs)
chr6 (31-169)||(22868490-22868628)
chr6 (94-169)||(9290661-9290736)
chr6 (29-160)||(33423919-33424050)
chr6 (29-123)||(18792787-18792879)
chr6 (44-169)||(18984526-18984651)
chr6 (84-122)||(2979663-2979701)
chr6 (47-159)||(13166474-13166585)
chr6 (86-146)||(28063007-28063066)
[»] chr4 (7 HSPs)
chr4 (22-169)||(16543389-16543536)
chr4 (20-192)||(16871657-16871827)
chr4 (84-160)||(37945522-37945598)
chr4 (109-191)||(16869513-16869595)
chr4 (53-160)||(54146652-54146758)
chr4 (84-173)||(54148300-54148387)
chr4 (93-149)||(24131825-24131881)
[»] chr7 (8 HSPs)
chr7 (86-192)||(46963063-46963169)
chr7 (29-169)||(6840549-6840688)
chr7 (86-169)||(46964417-46964500)
chr7 (84-160)||(2628240-2628316)
chr7 (29-149)||(15614192-15614312)
chr7 (86-150)||(26403495-26403559)
chr7 (87-160)||(21814465-21814537)
chr7 (109-150)||(44337395-44337436)
[»] chr2 (5 HSPs)
chr2 (86-192)||(8986933-8987039)
chr2 (86-192)||(8985580-8985686)
chr2 (59-160)||(32291193-32291294)
chr2 (20-66)||(29408976-29409022)
chr2 (57-125)||(42633677-42633745)
[»] chr1 (5 HSPs)
chr1 (86-192)||(6696021-6696127)
chr1 (20-131)||(9168376-9168487)
chr1 (85-169)||(15629345-15629429)
chr1 (85-169)||(15630144-15630228)
chr1 (20-160)||(28665018-28665155)
[»] chr8 (5 HSPs)
chr8 (29-148)||(44374661-44374779)
chr8 (20-192)||(33199415-33199585)
chr8 (111-169)||(43615487-43615545)
chr8 (109-150)||(20241073-20241114)
chr8 (109-150)||(20251953-20251994)
[»] chr5 (3 HSPs)
chr5 (32-161)||(11343870-11343998)
chr5 (84-150)||(24137646-24137712)
chr5 (100-160)||(11320488-11320547)
[»] scaffold0511 (1 HSPs)
scaffold0511 (29-123)||(11262-11354)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 30057270 - 30056924
Alignment:
Q  13 aaaatatatacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattat 112  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||    
T  30057270 aaaaaatatacaaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattat 30057171  T
Q  113 aagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttattataccagtatcaaccttttgga 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  30057170 aagagaatatataacaaaatctaatggactctaacttatgaatataaatgcccaataacttgagtttaatactttattataccagtatcaaccttttgga 30057071  T
Q  213 aatcgcttggaaaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtgccgactattgcattaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30057070 aatcgcttggaaaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtgccgactattgcattaca 30056971  T
Q  313 aattaagatgttgatgccacgtcgccaatcattatatgtcgataatg 359  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  30056970 aattaagatgttgatgccacgtcgccaatctttatatgtcgataatg 30056924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 359
Target Start/End: Complemental strand, 30045534 - 30045383
Alignment:
Q  209 tggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttat----gagttcttatttccctttgaaaataacttgtgtgccgactatt 304  Q
    |||||||| |||| ||||||||||||  ||||||||| |||| ||||||||||    ||||||| | ||||||| |||||||| ||||||||||||||||    
T  30045534 tggaaatcacttgaaaaatagggatt--catttcctttggtatagacttttatatatgagttctcacttccctt-gaaaataagttgtgtgccgactatt 30045438  T
Q  305 gcattacaaattaagatgttgatgccacgtcgccaatcattatatgtcgataatg 359  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  30045437 gcattacatattaagatgctgatgccacgtcgccaatctttatatatcgataatg 30045383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 196 - 359
Target Start/End: Complemental strand, 30174762 - 30174601
Alignment:
Q  196 agtatcaaccttttggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtg 295  Q
    |||||| ||||| || ||||| |||||||||| ||||||  |||||||||  |||||| |||||||||||||  ||||||||| |||||||||||| |||    
T  30174762 agtatctaccttatgaaaatcacttggaaaatggggatt--catttcctttagtaaaggcttttatgagttcacatttccctt-gaaaataacttgcgtg 30174666  T
Q  296 ccgactattgcattacaaattaagatgttgatgccacgtcgcc-aatcattatatgtcgataatg 359  Q
    || |||||||||||||| |||||||||||||||||||||| || |||| ||||||||| ||||||    
T  30174665 ccaactattgcattacatattaagatgttgatgccacgtccccaaatctttatatgtctataatg 30174601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 30155642 - 30155520
Alignment:
Q  238 atttccttcggtaaagacttttat--gagttcttatttccctttgaaaataacttgtgtgccgactattgcattacaaattaagatgttgatgccacgtc 335  Q
    |||||||| |||||||||||||||  ||||||| |||||| ||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||    
T  30155642 atttcctttggtaaagacttttatatgagttctcatttcc-tttgaaaatgatttgtgtgccgactattgcattacatattaagatgtcgatgccacgtc 30155544  T
Q  336 gccaatcattatatgtcgataatg 359  Q
    ||||||| ||  ||||||||||||    
T  30155543 gccaatctttcaatgtcgataatg 30155520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 30458280 - 30458441
Alignment:
Q  198 tatcaaccttttggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttat--gagttcttatttccctttgaaaataacttgtgtg 295  Q
    |||| ||||| ||| |||| |||||||||| ||||||  || || ||| |||||||||||||||  ||||||| ||||||||| |||||||||||| |||    
T  30458280 tatctaccttgtggtaatcacttggaaaatggggatt--cacttgctttggtaaagacttttatatgagttctcatttccctt-gaaaataacttgcgtg 30458376  T
Q  296 ccgactattg-cattacaaattaagatgttgatgccacgtcgccaatcattatatgtcgataatg 359  Q
    | |||||||| ||||||| ||||||||||||||| || |||||||||| ||||||||| ||||||    
T  30458377 cggactattggcattacatattaagatgttgatgtcaagtcgccaatctttatatgtctataatg 30458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 814354 - 814492
Alignment:
Q  56 aacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagaga--atatataacaaaatctaatagactctaacttatga 153  Q
    ||||||||| ||||| |||||  |||| | ||||||||||||| ||||| || ||||||||||  ||||||||| ||| ||||| ||||||||||||  |    
T  814354 aacaaagacagctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttacta 814453  T
Q  154 atataaatgcccaatagctttagtttgatactttattat 192  Q
    |||||||||||||||| ||| |||   ||||||||||||    
T  814454 atataaatgcccaataacttaagtccaatactttattat 814492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 18088068 - 18088219
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaa 119  Q
    |||| ||| |||||||||||| ||||||||| | | |||||| ||||||||||||||  ||||  ||||||||||   | |||||||  |||| ||||||    
T  18088068 ataccaatacaaaatagagaaagagagaatagggaaaacaaa-acggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaa 18088166  T
Q  120 tatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctt 173  Q
    ||||||| |||  ||||| ||||||||||||  |||||||| ||| ||||||||    
T  18088167 tatataataaac-ctaatggactctaacttactaatataaaggcctaatagctt 18088219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 42531422 - 42531318
Alignment:
Q  65 ggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcc 164  Q
    ||||||||||||  | || |||||| |||||||| |||||||| |||||||||||||||||| |||| |||||  ||| |||||||  |||||||| | |    
T  42531422 ggctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaagtc 42531323  T
Q  165 caata 169  Q
    |||||    
T  42531322 caata 42531318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 46691454 - 46691553
Alignment:
Q  92 cttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttatta 191  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||||| ||||||||||||  | |||||| | |||||| ||| ||||  |||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtataaaggtccaataacttaagttcaatactttatta 46691552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 814348 - 814266
Alignment:
Q  109 ttataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttattat 192  Q
    ||||||||||||||| ||| ||| ||||| ||||||||||||  ||||||||||||||||| ||| |||   ||||||||||||    
T  814348 ttataagagaatata-aacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattat 814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 50294754 - 50294694
Alignment:
Q  100 tacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    |||||||  |||||||| ||||||||| |||| ||||| ||||||||||||| ||||||||    
T  50294754 tacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 16463077 - 16463005
Alignment:
Q  87 aatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    ||||| |||||| ||||||||| ||| |||||||||||||  ||| ||||| ||||||||||||  ||||||||    
T  16463077 aatagattaacattacaaaagaatattagagaatatataa-taaacctaatggactctaacttactaatataaa 16463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 22868628 - 22868490
Alignment:
Q  31 aaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaa 130  Q
    |||||||||  || |||||| |||||||||||| ||||||||||||  |||| ||||||||| ||||| |||||||  |||||||||||||||||| |||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaa 22868529  T
Q  131 atctaatagactctaacttatgaatataaatgcccaata 169  Q
    | ||||| ||||||||||||  |||||||| ||||||||    
T  22868528 acctaatggactctaacttactaatataaaagcccaata 22868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 9290661 - 9290736
Alignment:
Q  94 taacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||| ||||||||||||| |||||||| || |||||    
T  9290661 taacattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaaggctcaata 9290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 33423919 - 33424050
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 128  Q
    |||||||||||| |||||||    ||||| ||||||||||||||||||| |||| | |||||||| |||| |||||| | ||||  |||||||||||| |    
T  33423919 caaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatataata 33424018  T
Q  129 aaatctaatagactctaacttatgaatataaa 160  Q
    ||| |||||  ||| |||||||  ||||||||    
T  33424019 aaacctaatgaactttaacttactaatataaa 33424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 18792787 - 18792879
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 123  Q
    ||||||||||||  ||||||||  ||||||||| |||||||| |||||  | || |||||||| |||||| |||||||| |||||||||||||||    
T  18792787 caaaatagagaa--agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatata 18792879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 18984651 - 18984526
Alignment:
Q  44 gagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactc 143  Q
    |||||||  ||||| ||| ||||||||||||||  | || | ||||||| |  || ||| |||| |||||||||||||||||| ||||  ||||  ||||    
T  18984651 gagaatagaaacaagaaaaacggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataaaacataatgtactc 18984552  T
Q  144 taacttatgaatataaatgcccaata 169  Q
    |||||||  |||||||| ||||||||    
T  18984551 taacttactaatataaaggcccaata 18984526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 2979701 - 2979663
Alignment:
Q  84 atcaatagcttaacagtacaaaagattataagagaatat 122  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  2979701 atcaatagcttaacattacaaaagattacaagagaatat 2979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 13166585 - 13166474
Alignment:
Q  47 aatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaa 146  Q
    |||| |||||||||  ||||||||||||||  | || |||||| |||||||| || ||||| |||| ||||||||||||| || |  ||||  |||||||    
T  13166585 aataggaacaacaataacggctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaa 13166487  T
Q  147 cttatgaatataa 159  Q
    ||| | |||||||    
T  13166486 cttgttaatataa 13166474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 28063007 - 28063066
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaa 146  Q
    ||||||||||||| |||||||| |||  ||||||||||| | |||||||||| ||||||||    
T  28063007 caatagcttaacattacaaaaggttactagagaatatat-ataaaatctaatggactctaa 28063066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 16543536 - 16543389
Alignment:
Q  22 acaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaata 121  Q
    |||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | |||||| ||| | |||||||    
T  16543536 acaaatacaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaata 16543437  T
Q  122 tataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    ||||| ||||  ||||  |||||||||||  |||||||| | ||||||    
T  16543436 tataataaaacttaatgaactctaacttactaatataaaaggccaata 16543389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 16871827 - 16871657
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcgg-agaacatcaatagcttaacagtacaaaagattataagaga 118  Q
    ||||| || |||||| ||||| ||||||| | |||||||   |||||||||||||||   |||  | ||||||||||||| |||||||| |||||||| |    
T  16871827 atacagatacaaaatggagaaagagagaacaagaacaac---gacggctagggtttcattagactaacaatagcttaacattacaaaaggttataagata 16871731  T
Q  119 atatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttattat 192  Q
    |||||||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | ||||||||||||    
T  16871730 atatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattat 16871657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 37945598 - 37945522
Alignment:
Q  84 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    |||||| | |||||| |||||||| |||||||||||||||||| ||||| |||| ||||||||||||  ||||||||    
T  37945598 atcaattgattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 16869595 - 16869513
Alignment:
Q  109 ttataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttatta 191  Q
    |||||||||| ||||||| ||||||||||  |||||||||||  |||||||| |||||||| ||| || |  |||||||||||    
T  16869595 ttataagagagtatataataaaatctaatgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 54146758 - 54146652
Alignment:
Q  53 aacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatg 152  Q
    ||||||||||||||||||| ||    | || ||||||||||||| | |||||||  |||| ||||||||||| |  ||||||||| ||||||||||||      
T  54146758 aacaacaaagacggctaggtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatga-taaatctaatggactctaacttact 54146660  T
Q  153 aatataaa 160  Q
    ||||||||    
T  54146659 aatataaa 54146652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 54148387 - 54148300
Alignment:
Q  84 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctt 173  Q
    ||||||||||||| | |||||| | |||| ||||||||||||| ||| |||| | ||||||||||||  |||||||| ||| ||||||||    
T  54148387 atcaatagcttaataatacaaatg-ttatgagagaatatataataaa-tctattggactctaacttactaatataaaagcctaatagctt 54148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 24131881 - 24131825
Alignment:
Q  93 ttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactt 149  Q
    |||||| |||||||  ||||||||||| |||||| |||| ||||| |||||||||||    
T  24131881 ttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 46963063 - 46963169
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 185  Q
    ||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  46963063 caatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatact 46963162  T
Q  186 ttattat 192  Q
    |||||||    
T  46963163 ttattat 46963169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 6840549 - 6840688
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 128  Q
    ||||||||||||  ||||||||| || ||||||||||| || ||||||  | || ||||||||||| ||| |||||||| |||||| ||||||||||| |    
T  6840549 caaaatagagaaacagagaatat-aagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatataata 6840647  T
Q  129 aaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    ||| ||||  ||||||||||||   ||||||| ||||||||    
T  6840648 aaacctaacggactctaacttactgatataaaggcccaata 6840688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 46964417 - 46964500
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    ||||||||||| | |||||||  |||||||||||||||||| |||||||||| ||||||||| ||  |||||||||||||||||    
T  46964417 caatagcttaatattacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaata 46964500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 2628240 - 2628316
Alignment:
Q  84 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||| |||| ||||| ||||||||||||  ||||||||    
T  2628240 atcaatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaa 2628316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 15614192 - 15614312
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 128  Q
    |||||||||||| |||| |||   ||| | ||||||  ||||||||||  |||| | ||||||||||| | |||||||| |||||| ||||||||||| |    
T  15614192 caaaatagagaaagagataatcaaaacgataaagacaactagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataata 15614291  T
Q  129 aaatctaatagactctaactt 149  Q
    ||| ||||| |||||||||||    
T  15614292 aaacctaatggactctaactt 15614312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 26403559 - 26403495
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactta 150  Q
    ||||||| ||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||    
T  26403559 caatagcataacattacaaaaagttataagagaatatataataaaatctaatcggctctaactta 26403495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 21814537 - 21814465
Alignment:
Q  87 aatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    ||||| |||||| ||||||||| ||| |||||||||||||  ||| ||||| ||||||||||||  ||||||||    
T  21814537 aatagattaacattacaaaagaatattagagaatatataa-taaacctaatggactctaacttactaatataaa 21814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 44337436 - 44337395
Alignment:
Q  109 ttataagagaatatataacaaaatctaatagactctaactta 150  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  44337436 ttataagagaatatataataaaatctaacggactctaactta 44337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 8987039 - 8986933
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 185  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  8987039 caatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataacttaagcctaatact 8986940  T
Q  186 ttattat 192  Q
    |||||||    
T  8986939 ttattat 8986933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 8985686 - 8985580
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 185  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||| |||||||  |||||||||| |||||| ||| ||  | |||||    
T  8985686 caatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatact 8985587  T
Q  186 ttattat 192  Q
    |||||||    
T  8985586 ttattat 8985580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 32291294 - 32291193
Alignment:
Q  59 aaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatata 158  Q
    ||||||||||| ||||||  |||| |||||| ||||  || |||||||| |||||||||||||||||| |||   |||| ||||||||||||  ||||||    
T  32291294 aaagacggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatata 32291195  T
Q  159 aa 160  Q
    ||    
T  32291194 aa 32291193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 29408976 - 29409022
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacgg 66  Q
    ||||| || |||||||||||| ||||||||| |||||||||||||||    
T  29408976 atacatatacaaaatagagaaagagagaataagaacaacaaagacgg 29409022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 42633677 - 42633745
Alignment:
Q  57 acaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatata 125  Q
    ||||| |||| || ||||||  |||| |||||| |||||||| ||||||||||||  ||||||||||||    
T  42633677 acaaaaacggttatggtttcatagaatatcaattgcttaacattacaaaagattactagagaatatata 42633745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 6696127 - 6696021
Alignment:
Q  86 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 185  Q
    ||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  6696127 caatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatact 6696028  T
Q  186 ttattat 192  Q
    |||||||    
T  6696027 ttattat 6696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 9168376 - 9168487
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaa 119  Q
    ||||| || |||||||||||| |||||||||||| ||||||||||||||||||||||  | || ||||||| ||| | |  ||||||  |||||||||||    
T  9168376 atacatatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaa 9168475  T
Q  120 tatataacaaaa 131  Q
    ||||||| ||||    
T  9168476 tatataataaaa 9168487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 15629345 - 15629429
Alignment:
Q  85 tcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||||||  |||||||||||  |||||||| | ||||||    
T  15629345 tcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaaggtccaata 15629429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 15630144 - 15630228
Alignment:
Q  85 tcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    |||||| ||||| | | |||||| |||||||||||||||||| |||| ||||||||||||||||||  |||||||| ||||||||    
T  15630144 tcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaaggcccaata 15630228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 28665155 - 28665018
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcgg-agaacatcaatagcttaacagtacaaaagattataagaga 118  Q
    ||||| || |||||| ||||| ||||||||| |||||||   |||||||||||||||   |||| | ||||||||||| | |||||||  |||| |||||    
T  28665155 atacagatacaaaatggagaaagagagaataggaacaac---gacggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagaga 28665059  T
Q  119 atatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    ||||||||  ||| ||||| ||||||||||||  ||||||||    
T  28665058 atatataa-taaacctaatggactctaacttactaatataaa 28665018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 44374779 - 44374661
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 128  Q
    |||||||||||| |||| |||||||||||||||||||||||   ||||  || | |||||||||| |||| || |||||||||||| ||||||||||| |    
T  44374779 caaaatagagaaagagataatatgaacaacaaagacggctaaa-tttcatagcatatcaatagctaaacattaaaaaagattataaaagaatatataata 44374681  T
Q  129 aaatctaatagactctaact 148  Q
    |||  |||||||||||||||    
T  44374680 aaacataatagactctaact 44374661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 33199585 - 33199415
Alignment:
Q  20 atacaaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaa 119  Q
    |||||||| ||||||| |||| ||||||||  |||||||  ||   ||||| |||||  |||||||||| | ||||||| ||||||||||||||||  ||    
T  33199585 atacaaatacaaaataaagaaagagagaatgagaacaacggag---gctagagtttcatagaacatcaacaacttaacattacaaaagattataaggaaa 33199489  T
Q  120 tatataacaaaatctaa-tagactctaacttatgaatataaatgcccaatagctttagtttgatactttattat 192  Q
    ||||||| |||| |||| || ||||| |||||  |||||||| || ||||| ||| || |  ||||||||||||    
T  33199488 tatataataaaacctaattatactctgacttactaatataaaagctcaataacttaagatcaatactttattat 33199415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 43615545 - 43615487
Alignment:
Q  111 ataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 169  Q
    |||||| ||||||||| |||||||||| ||||||||||||  |||||||| || |||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaagctcaata 43615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 20241114 - 20241073
Alignment:
Q  109 ttataagagaatatataacaaaatctaatagactctaactta 150  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  20241114 ttataagagaatatataataaaatctaacggactctaactta 20241073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 20251953 - 20251994
Alignment:
Q  109 ttataagagaatatataacaaaatctaatagactctaactta 150  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  20251953 ttataagagaatatataataaaatctaacggactctaactta 20251994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 11343870 - 11343998
Alignment:
Q  32 aatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtac-aaaagattataagagaatatataacaaa 130  Q
    ||||||||| ||||||| ||||| |||||||||||||| ||||||  | || ||||||||||||||| ||| ||||  |||||||||| ||||||| |||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcata-aaaatcaatagcttaacattacaaaaatgttataagagagtatataataaa 11343968  T
Q  131 atctaatagactctaacttatgaatataaat 161  Q
    |  |||| ||||||||||||  |||||||||    
T  11343969 acttaat-gactctaacttactaatataaat 11343998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 24137712 - 24137646
Alignment:
Q  84 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactta 150  Q
    |||||| |||||||| |||| ||| |||||||||||||||||| |||| ||||||||||||||||||    
T  24137712 atcaattgcttaacattacagaaggttataagagaatatataataaaacctaatagactctaactta 24137646  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 11320488 - 11320547
Alignment:
Q  100 tacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 160  Q
    |||||||| |||||||||||||||||| ||||| |||| ||||| ||||||  ||||||||    
T  11320488 tacaaaaggttataagagaatatataataaaat-taatggactccaacttactaatataaa 11320547  T

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Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 11354 - 11262
Alignment:
Q  29 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 123  Q
    ||||||||||||  ||||||||  ||||||||| |||||||| |||||  | || |||||||| |||||| |||||||| |||||||||||||||    
T  11354 caaaatagagaa--agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatata 11262  T

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