View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_54 (Length: 397)
Name: NF3820_low_54
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7340480 - 7340822
Alignment:
| Q |
1 |
atcactattctgaattatgatgctgatatctgatgaatattttgttaattatcataaagttatctaatcttagaacattggcctatgagttacaagagtt |
100 |
Q |
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| T |
7340480 |
atcactattatgaattatgatgctgatatctgatgaatattttgttaattatcataaagttatctaatcttaggacattggcctatgagttacaagagtt |
7340579 |
T |
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| Q |
101 |
gacatctatgatcagcaagtaagattaatagtttgatgcacaaatccattacattgcagttaaaaccaaaaggaaatgcagatcagccattgaaagcaag |
200 |
Q |
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| T |
7340580 |
gacatctatgaccaacaagtaagattaatagtttgatgcacaaatccattacattgcagttaaaaccaaaaggaaatgcagatcagccattgaaagcaag |
7340679 |
T |
|
| Q |
201 |
gagaaaaggccatcacaattcacaaaagtcctgca-tttgacaactcgtatagtcgcagcgcagctcaattggaataatatgcaattcggattttaattt |
299 |
Q |
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| T |
7340680 |
gagaaaaggccatcacaattcacaaaagtcctgcattttgacaactcgtatagtcgcagcgcagctcagtcggaataatatgcaattcggattttaattt |
7340779 |
T |
|
| Q |
300 |
gatggaagaaggaattgaaattttactatttcagaatgagttt |
342 |
Q |
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| T |
7340780 |
gatggaagaaggaattgaaatttgactatttcagaatgagttt |
7340822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 342
Target Start/End: Complemental strand, 44413380 - 44413202
Alignment:
| Q |
165 |
accaaaaggaaatgcagatcagccattgaaagcaa-ggagaaaaggccatcacaattcacaaaagtcctgcatttgacaactcgtatagtcgcagcgcag |
263 |
Q |
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| T |
44413380 |
accaaaaggaaatgcggctcagccattggaaacgatggagaaaaggccatcatgattaacaaatgtcctgcttttgacaactgatgtagtagcaatgcag |
44413281 |
T |
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| Q |
264 |
ctcaattggaataatatgcaattcggattttaatttgatggaagaaggaattgaaattttactatttcagaatgagttt |
342 |
Q |
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| T |
44413280 |
ttcaatcgaaaaaacttgcggttcggattttaatttgatggaacaaggaatttaaatttgacaatttcaggaagagttt |
44413202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 7340844 - 7340885
Alignment:
| Q |
343 |
taatttgatccctaaacccttccaatcaacaatacatagcct |
384 |
Q |
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| T |
7340844 |
taatttgatccctaaacccttccaatcaacaatacatagcct |
7340885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 43683488 - 43683448
Alignment:
| Q |
292 |
tttaatttgatggaagaaggaattgaaattttactatttca |
332 |
Q |
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| T |
43683488 |
tttaatttgatggaagaagatattgaaatttgactatttca |
43683448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 23083816 - 23083969
Alignment:
| Q |
11 |
tgaattatgatgctgatatctgatgaatattttgttaattatcataaagttatctaatcttagaacattggcctatgagttacaagagttgacatctatg |
110 |
Q |
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||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
23083816 |
tgaattaagatgccgatatctgatgaatattttgtcaattatcagcaagttatttaatcttgaaacattggcctatgagttacaagagttgacatatatg |
23083915 |
T |
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| Q |
111 |
atcagcaagtaagattaatagtttgatgcacaaatccattacattgcagttaaa |
164 |
Q |
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| T |
23083916 |
accaaaaagtaagatcaattgtctgatgcacaaatccagtaccttgtagttaaa |
23083969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 23083968 - 23084042
Alignment:
| Q |
267 |
aattggaataatatgcaattcggattttaatttgatggaagaaggaattgaaattttactatttcagaatgagttt |
342 |
Q |
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| T |
23083968 |
aattgaaattatatgcaattcagattt-aatttgatggaagaaggaattgaaatttgactatttcaaaaagagttt |
23084042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 28910616 - 28910559
Alignment:
| Q |
11 |
tgaattatgatgctgatatctgatgaatattttgttaattatcataaagttatctaat |
68 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
28910616 |
tgaattatgaagctgatattcgatgaatattttgttaattatcagcacgttatctaat |
28910559 |
T |
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