View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_59 (Length: 385)
Name: NF3820_low_59
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 42349141 - 42349501
Alignment:
| Q |
18 |
attcatttgtcatatccatttgaaatttaaaagtgaatcacacttgagaagttaagaacttttagtcaatcactcgactaattttcaagtctgacatcan |
117 |
Q |
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| T |
42349141 |
attcatttgtcgtagccatttgaaatttaaaagtgaatcacaactgagaagttaagaactcttagtcaatcactcgactaattttcaagtctgacatcat |
42349240 |
T |
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| Q |
118 |
nnnnnnnagggaagtttgaaaacatttatatagcaagataagtttagtaatataaagacttaaatgtatttttggtctctttgttttgcctaaattaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
42349241 |
tttttt-agggaagtttgaaaacatttatatagcaagataagtgtagtactataaagacttaaatgtatttttggtctctctattttgcctaaattaaaa |
42349339 |
T |
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| Q |
218 |
ttttaatctaagtatttctaaaatcggatcattggtctccttgtttcata---------attttatatcctccctcaatttgaggnnnnnnncttcgaat |
308 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
42349340 |
ttttaatctatgtatttctaaaatcgggtcattggtctccttgtttcataattttcatgattttatatcctccctcaatttgaggtttttttcttcgaat |
42349439 |
T |
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| Q |
309 |
ctttcatcatcgtatgattagatgacactccataacagatctcataataatcacttcccggc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
42349440 |
ctttcatcatcgtatgattagatgacactccataacgaatctcataataatcacttcacggc |
42349501 |
T |
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