View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_6 (Length: 861)
Name: NF3820_low_6
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 295 - 839
Target Start/End: Complemental strand, 11957783 - 11957239
Alignment:
| Q |
295 |
tttgtctttgtggggtgtgtcacttttgccaagcaaaggaaatgaaggagttgatgtggttttgttgaagtttttgagagctagagagtttaaggtgaat |
394 |
Q |
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| T |
11957783 |
tttgtctttgtggggtgtgtcacttttgccaagcaaaggaaatgaaggagttgatgtggttttgttgaagtttttgagagctagagagtttaaggtgaat |
11957684 |
T |
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| Q |
395 |
gaagcatttgagatgttgaagaagacacttaaatggaggaaggaaatgaagattgattcggttttggaagaagattttggttctgatttggcttctgctg |
494 |
Q |
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| T |
11957683 |
gaagcatttgagatgttgaagaagacacttaaatggaggaaggaaatgaagattgattcggttttggaagaagattttggttctgatttggcttctgctg |
11957584 |
T |
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| Q |
495 |
cttatatgaacggtgttgatcgcgaaggacaccctgtgtgttacaacatctatagtgtgtttgatggtgaagagatttatcaaaagacttttgggactga |
594 |
Q |
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| T |
11957583 |
cttatatgaacggtgttgatcgcgaaggacaccctgtgtgttacaacatctatagtgtgtttgatggtgaagagatttatcaaaagacttttgggactga |
11957484 |
T |
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| Q |
595 |
ggagaagagaaaagagtttttgagatggaggtgttctgttatggagaaatggattcagaagctcaatttgaaaccaggtggtgtttcttctttgcttcag |
694 |
Q |
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| T |
11957483 |
ggagaagagaaaagagtttttgagatggaggtgttctgttatggagaaatggattcagaagctcaatttgaaaccaggtggtgtttcttctttgcttcag |
11957384 |
T |
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| Q |
695 |
attaatgatcttaagaattccccaggaccgtcaaagaaagagcttagaattgcaacaaagcaaactgttacaatgttgcaggacaattaccctgagttgg |
794 |
Q |
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| T |
11957383 |
attaatgatcttaagaattccccaggaccgtcaaagaaagagcttagaattgcaacaaagcaaactgttacaatgttgcaggacaattaccctgagttgg |
11957284 |
T |
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| Q |
795 |
tagccaaaaatgtaagtttctttttcacaatataacactgcttaa |
839 |
Q |
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| T |
11957283 |
tagccaaaaatgtaagtttctttttcacaatataacactgcttaa |
11957239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 11958070 - 11957862
Alignment:
| Q |
11 |
gaagcaaaggaatcaatggaagaatcaaaacccacaaagacagttgagaaatgttcatcttataaggaagaaagtaactttctttctgatctcaaagagt |
110 |
Q |
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| T |
11958070 |
gaagcaaaggaatcaatggaagaatcaaaacccacaaagacagttgagaaatgttcatcttataaggaagaaagtaactttctttctgatctcaaagagt |
11957971 |
T |
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| Q |
111 |
ttgagaaaaaggctttgattgagtttagatcaaaggttgaagaagcagttttagggaacaccctttttgagaaaaaggaagaagagaccaaaaaggttga |
210 |
Q |
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| T |
11957970 |
ttgagaaaaaggctttgattgagtttagatcaaaggttgaagaagcagttttagggaacaccctttttgagaaaaaggaagaagagaccaaaaaggttga |
11957871 |
T |
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| Q |
211 |
aactttacc |
219 |
Q |
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| T |
11957870 |
aactttacc |
11957862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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