View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_60 (Length: 384)
Name: NF3820_low_60
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 9822151 - 9822528
Alignment:
| Q |
1 |
ttgaatcatgatattgtg-caaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgca |
99 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822151 |
ttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctattgagtagatatctaaaacttttaatattgctgttgctgattgca |
9822250 |
T |
|
| Q |
100 |
atttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaat |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822251 |
atttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaat |
9822350 |
T |
|
| Q |
200 |
tcattttttcaaattttaacatgtcagcgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgtcttgtgat |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822351 |
tcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgtcttgtgat |
9822450 |
T |
|
| Q |
300 |
tggttcgaagtttcctgtaaacttgagctttgatctgcgnnnnnnnnnactgttacaatgcatgtataattttttctctg |
379 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
9822451 |
tggttcgaagtttcatgtaaacttgagctttgatctgcg--tttttttactgttacaacgcatgtataattttttctctg |
9822528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 6275333 - 6274962
Alignment:
| Q |
1 |
ttgaatcatgatattgtg-caaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgca |
99 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275333 |
ttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgca |
6275234 |
T |
|
| Q |
100 |
atttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6275233 |
atttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatgg------gtgatacattcgattaat |
6275140 |
T |
|
| Q |
200 |
tcattttttcaaattttaacatgtcagcgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgtcttgtgat |
299 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6275139 |
tcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaaaaagttctataatgtcttgtgat |
6275040 |
T |
|
| Q |
300 |
tggttcgaagtttcctgtaaacttgagctttgatctgcgnnnnnnnnnactgttacaatgcatgtataattttttctctg |
379 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
6275039 |
tggttcgaagtttcatgtaaactggagctttgatctgcg--tttttttactgttacaaagcatgtataattttttctctg |
6274962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 333
Target Start/End: Original strand, 9822890 - 9823126
Alignment:
| Q |
102 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
201 |
Q |
| |
|
|||||| |||||| ||||| ||||||| ||| || |||| |||||||||||| ||||||| ||||||||| | |||||||||||||||| |||||||| |
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| T |
9822890 |
ttagaatcattgcttgaatattgaatagaaaccattgtagcaccgacacttctaatggaaccggcaggacacagccatatgtgatacattcaattaattc |
9822989 |
T |
|
| Q |
202 |
attttttcaaattttaaca----tgtcagc-gtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgtcttgt |
296 |
Q |
| |
|
|||||||||| ||||||| ||| | |||| | ||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| |||||| | |
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| T |
9822990 |
attttttcaagttttaactatggtgtatggtgtcgtgtctggtgtatgtgctacatagataaaaattgatatattcttaaaaagttctattgtgtcttat |
9823089 |
T |
|
| Q |
297 |
gattggttcgaagtttcctgtaaacttgagctttgat |
333 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| |
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|
| T |
9823090 |
gattggttcgaagtttcatgtaaactgtagctttgat |
9823126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 6274605 - 6274364
Alignment:
| Q |
102 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
201 |
Q |
| |
|
|||||| ||| || ||||| ||||||| ||| || | || |||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |
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| T |
6274605 |
ttagaatcatcgcttgaatattgaatagaaaccattatagcaccgacacttctaatggaaccggcaggacacaaccatatgcgatacattcaattaattc |
6274506 |
T |
|
| Q |
202 |
attttttcaaattttaac----------atgtcagcgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgt |
291 |
Q |
| |
|
|||||||||| ||||||| ||||| | |||| | ||||||| ||||||||||| ||| || ||||||||||||||| ||||||||| ||| |
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|
| T |
6274505 |
attttttcaagttttaactggtgtcgacatgtctgtgtcgtgtctggtgtatgtgctacatagataaaatttgatatattcttaaaaagttctattgtgt |
6274406 |
T |
|
| Q |
292 |
cttgtgattggttcgaagtttcctgtaaacttgagctttgat |
333 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |
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| T |
6274405 |
cttgtgattggttcgaagtttcatgtaaactgtagctttgat |
6274364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 6273963 - 6273722
Alignment:
| Q |
102 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
201 |
Q |
| |
|
|||||| ||| || ||||| ||||||| ||| || | || |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||| |
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|
| T |
6273963 |
ttagaatcatcgcttgaatattgaatagaaaccattttagcaccgacacttctaatggaaccggcaggacacaaccatatgtgatacattcaattaattc |
6273864 |
T |
|
| Q |
202 |
attttttcaaattttaac----------atgtcagcgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagttctataatgt |
291 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||| | ||||||| ||||||||| | ||| ||||||||| |||||||| ||||||||| ||| |
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|
| T |
6273863 |
attttttcaagttttaactggtgtcgacatgtctgtgtcttgtctggtgtatgtgctacagagataaaaattgatacattcttaaaaagttctattgtgt |
6273764 |
T |
|
| Q |
292 |
cttgtgattggttcgaagtttcctgtaaacttgagctttgat |
333 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
6273763 |
cttgtgattggttcgaagtttcatgtaaactgtagctttgat |
6273722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 35679133 - 35679481
Alignment:
| Q |
1 |
ttgaatcatgatattgtg-caaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgca |
99 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||| | || | |||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |
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|
| T |
35679133 |
ttgaatcatgatattgcggcaaattgtggcagatgagactgtagttacaatgccgttgagtagatatctaaaaaattta-tattgctgttgttgattgca |
35679231 |
T |
|
| Q |
100 |
atttagaaccattgcctgaa---tgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgatt |
196 |
Q |
| |
|
|||||||||||| || |||| ||||||||| |||||||| || ||||||||||| ||||| || ||| || || | ||| ||||||||| ||| |
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|
| T |
35679232 |
atttagaaccatagcttgaatgttgttgaatagaaatcactatagcaccgacacttttgatgggttcggaaggtcactgaaacatg-gatacattcaatt |
35679330 |
T |
|
| Q |
197 |
aattcatttt------ttcaaattttaac--------atgtcagcgtcgggcctggtgtctgtgctacatatatagaaattgatatattcttaacaagtt |
282 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||| | ||||||| ||||| |||| || ||| ||||||||||||||| ||||| |
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|
| T |
35679331 |
aattcattttttgttcttcaaattttaacctgtgtcagtgtcagtgtcgtgaatggtgtcggtgcttcatagatggaagttgatatattcttaaaaagtt |
35679430 |
T |
|
| Q |
283 |
ctataatgtcttgtgattggttcgaagtttcctgtaaacttgagctttgat |
333 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
35679431 |
ctatagtttcttgtgattggttcgaagtttcatgtaaactggagctttgat |
35679481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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