View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_64 (Length: 377)
Name: NF3820_low_64
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 3884212 - 3884577
Alignment:
| Q |
1 |
tatcataactgaattttgtttcattttagggacatgataaagatgttctttccatttgttgggatagaacggggaagtatattgcctctgtcagtgaaga |
100 |
Q |
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| T |
3884212 |
tatcataactgaattttgtttccttttagggacatgataaagatgttctttccatttgttgggatagaacgggaaagtatattgcctctgtcagtgaaga |
3884311 |
T |
|
| Q |
101 |
ttgtgcacgagtctggtcggacggagaatgcatcggcgagttgcattcaaacgggaacaagtttcaatcgtgcatatttcatccgggatattgtaacctc |
200 |
Q |
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| T |
3884312 |
ttgtgcacgagtctggtcgaacggagaatgcatcggcgagttgcattcaaacgggaacaagtttcaatcgtgcatatttcatccgggatattgtaacctc |
3884411 |
T |
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| Q |
201 |
ttagttattggtggctatcaggtaagcccttcttccatcatgtgattgatatttttgcccttgcctttctgtatactcctgaagttataattttctttag |
300 |
Q |
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| T |
3884412 |
ttagttattggtggctatcaggtaagcccttcttccatcatgtgattgatatttttgcccttgcctttctgaatactcctgaagttataattttctttag |
3884511 |
T |
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| Q |
301 |
catatattagaaactccaattcccttctaaatttatctacaaaactttgcagtcccttgaattctg |
366 |
Q |
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| T |
3884512 |
catatattagaaactccaattcccttctaaatttatctacaaaactttgcagtcccttgaattctg |
3884577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 35240846 - 35240794
Alignment:
| Q |
81 |
attgcctctgtcagtgaagattgtgcacgagtctggtcggacggagaatgcat |
133 |
Q |
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| T |
35240846 |
attgcctctgtcagtgaagatgatgtacgtgtctggtcggacggacaatgcat |
35240794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 35237828 - 35237790
Alignment:
| Q |
81 |
attgcctctgtcagtgaagattgtgcacgagtctggtcg |
119 |
Q |
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| T |
35237828 |
attgcctctgtcactgaagattgtgcacgtgtctggtcg |
35237790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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