View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_67 (Length: 368)
Name: NF3820_low_67
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 55240247 - 55239897
Alignment:
| Q |
1 |
tcacaattacttaccaaccaaccactgacttactactttacaaaagccaattcctatttgaatttcaagtgaggttggcagtggcagcagaccaacttac |
100 |
Q |
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| T |
55240247 |
tcacaattacttaccaaccaaccactgacttactactttacaaaagccaattcctatttgaatttcaagtgaggttggcagtggcagcagaccaacttac |
55240148 |
T |
|
| Q |
101 |
ccatccatccgaactcctaataaatatgtatagactcaactttctttcttcctttgttgtgtaagtaattcaaaaaatatgcctttctccaattgtcaaa |
200 |
Q |
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| T |
55240147 |
ccatccatctgaactcctaataaatatgtatagactcaactttctttcttcctttgttgtgtaagtaattcaaaaaatatgcctttctccaattgtcaaa |
55240048 |
T |
|
| Q |
201 |
atttaatgtgtcctcctattatttgcagggtcgttggcaaattaaattaaatgcgttaccaccaaatttaagactctgcatttctctgtctccctcctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55240047 |
atttaatgtgtcctcctattatttgcagggtcgttggcaaattaaattaaatgcgttaccaccaaatttaagactctgcatttctctgtctccctcctcc |
55239948 |
T |
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| Q |
301 |
cacatattaaattttaagaatctcacacttactcaaacaaaacatatatgc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55239947 |
cacatattaaattttaagaatctcacacttactcaaacaaaacatatatgc |
55239897 |
T |
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