View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_68 (Length: 366)
Name: NF3820_low_68
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_68 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 33104847 - 33104510
Alignment:
| Q |
13 |
aaggtgaagatgaaggtgatgttgggttgtttgatggataaggagatggtgctattccatttccagagggtgtttgtgctactcctggaggtagagatga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33104847 |
aaggtgaagatgaaggtgatgttgggttgttaaattgataaggagatggtgctattccatttccagagggtgtttgtgctactcctggaggtagagatga |
33104748 |
T |
|
| Q |
113 |
tgatggagaagaagtgcttggtgcttgaatgtaaggtggctgagatgttggggaatgagcgtttggtggggtttgtatatatggaggttgtgaaattgga |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33104747 |
tgatggagaagaggtgcttggtgcttgaatgtaaggtggctgagatgttggggaatgagcgtttggtggggtttgtatatatggaggttgtgaaattgga |
33104648 |
T |
|
| Q |
213 |
gaaggagctcctgatggtgtttgaatataaggtgtatttgaagatggagaaggagtgctttttggaggtgttgaaatatatggtgtttgagaggatggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33104647 |
gaaggagctcctgatggtgtttgaatataaggtgtatttgaagatggagaaggagtgctttttggaggtgttgaaatatatggtgtttgagaggatggag |
33104548 |
T |
|
| Q |
313 |
gagtactttttggaggtgttgaaatgtaaggtggttgt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33104547 |
gagtactttttggaggtgttgaaatgtatggtggttgt |
33104510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University