View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_72 (Length: 359)
Name: NF3820_low_72
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 49162687 - 49162364
Alignment:
| Q |
19 |
ttcctttgtttttccatgtattattgaattgcatgtaagttgtagaaggtaaaaggtaataaaaatacaaatgaatatatatggtgtcacatacggcatc |
118 |
Q |
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| T |
49162687 |
ttccttagtttttccatgtattattgaattgcatgtaagttgtaaaaggtaaaaagtaataaaaatacaaataaatatatatggtgtcacatacggcatc |
49162588 |
T |
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| Q |
119 |
tcnnnnnnnattttcaaataactactaatttttcaaggtatacaacatgattgtgtcatcatatgataatttagcggtggagggtatttgttggacacca |
218 |
Q |
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| T |
49162587 |
tctttttttattttcaaataactactaatttttcaaggtatacagcatgattgtgtcgtcatatgctaatttagcggtggaggatatttgttggacacca |
49162488 |
T |
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| Q |
219 |
ccagtgatgggctgggttagtcttaacatcgacaacacttctaaaggtaacttgagtgcaacttgtgg-agggatattgtgcggaaataatggcgaatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
49162487 |
ccagtgatgggctgggttagtcttaacatcgacaacacttctaagggtaacttgagtgcaacttgtggaaggtatattgtgcggaaataatggcgaatga |
49162388 |
T |
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| Q |
318 |
atttgtggtttctcaaaaaatata |
341 |
Q |
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|||||||||||||| ||||||||| |
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| T |
49162387 |
atttgtggtttctctaaaaatata |
49162364 |
T |
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