View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_76 (Length: 353)
Name: NF3820_low_76
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 48269351 - 48269685
Alignment:
| Q |
1 |
cacagagctgagggctgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatcaacacgatggcagttcgagtccagtta |
100 |
Q |
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| T |
48269351 |
cacagagctgagggctgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatcaacacgatggcagttcgagtccagtta |
48269450 |
T |
|
| Q |
101 |
atgattcaagcccaagctacaatagttttccgatggaggacaacataaaagcgcaagcaacaatgagggttgagcctatggtggcatcacccttaaagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48269451 |
atgattcaagcccaagctacaatagttttccgatggaggacaacataaaagcgcaagcaacaatgagggttgagcctatggtggcatcacccttaaagga |
48269550 |
T |
|
| Q |
201 |
aggcgttgttgaacaaggttttagcgcaagaccaggtgccattagcaaattggaagctcataatggagtaagaccttctactgataatactgggatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48269551 |
aggcgttgttgaacaaggttttagcgcaagaccaggtgccattagcaaattggaagctcataatggagtaagaccttctactgataatactgggatttct |
48269650 |
T |
|
| Q |
301 |
aataattttgagcctcaacatgaaggtggtaggat |
335 |
Q |
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| T |
48269651 |
aataattttgagcctcaacatgaaggtggtaggat |
48269685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 25241055 - 25241113
Alignment:
| Q |
16 |
tgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatca |
74 |
Q |
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|||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25241055 |
tgttatatgtgtcagaaaaaactgcctcatgctcattcagatccagtggttcaggatca |
25241113 |
T |
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