View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_80 (Length: 340)
Name: NF3820_low_80
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 43504828 - 43505157
Alignment:
| Q |
1 |
tttgccaaaatttatctgtagaatatcttgttacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacaccgagagaattttcaac |
100 |
Q |
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| T |
43504828 |
tttgcctaaacttatctgtagaatatcttgttacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacacagagagaattttcaac |
43504927 |
T |
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| Q |
101 |
ttttgtaaaaagccaattgaatctggaagtgacttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatca |
200 |
Q |
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| T |
43504928 |
ttttgtaaaaagccaattgaatctggaagtgacttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatca |
43505027 |
T |
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| Q |
201 |
cctatcatatccagccaaaataaataaatcaaataagaaatctcctcttggaaatctagttcaaagaatgtaaattacaaagaagaagaaggttagttca |
300 |
Q |
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| T |
43505028 |
cctatcatatgcagccaaaataaataaatcaaataagaaatctcctcttggaaatctagttcaaagaatgtaaattacaaagaagaagaaggttagttca |
43505127 |
T |
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| Q |
301 |
taatccaccatttcctaaatttcacctttg |
330 |
Q |
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| T |
43505128 |
taatccaccatttcctaaatttcacctttg |
43505157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 34565196 - 34565368
Alignment:
| Q |
32 |
tacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacaccgagagaattttcaacttttgtaaaaagccaattgaatctggaagtg |
131 |
Q |
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||||||||||||| |||| ||||||||| ||| | | ||| |||||||| || ||| | |||||||||||||| ||| ||||||||||| || |||| |
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| T |
34565196 |
tacctgcactgacaaatggcatcaggaagggcagtaagcttgtttccagaaacattgagcaatttcaacttttgtagaaatccaattgaatcgggcagtg |
34565295 |
T |
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| Q |
132 |
acttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatcaccta |
204 |
Q |
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| T |
34565296 |
attccaaatgatttgcagagagattaagctcctccagattttgcaatccaactattgagtcaggaatcaccta |
34565368 |
T |
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