View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_81 (Length: 339)
Name: NF3820_low_81
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 15570675 - 15570989
Alignment:
| Q |
20 |
ctacattcatgcaaatgaagcatattattgtgcgttcttttcaaaaaa-tattattctatnnnnnnnntcactttatgttattataaattaataactaac |
118 |
Q |
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| T |
15570675 |
ctacattcatgcaaatgaagcatattattgtgcgttctttttaaaaaaatattattctataaaaaaaatcactttatgtcat---aaataaaaaactaac |
15570771 |
T |
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| Q |
119 |
nnnnnnnatgcaaaacaatcattttgcattccattgttgtttcaatatttttacctaaagcattaaaatatatgcattgtcgagttgccccctattacaa |
218 |
Q |
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| T |
15570772 |
tttttttatgcaaaacaatcattttgcattccattgttgtttcaatatttttacctaaagcattaaaatatatgcattgtcgagttgccccctattacaa |
15570871 |
T |
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| Q |
219 |
taaatccaccaatgccaaccccactatattaaatgcaaattatacgtgtacaattatatgacgtaatcaattaaattccatgttggtataaataatagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15570872 |
taaatccaccaatgccaaccccactatattaaatgcaaattatacgtgtacaattatatgacgtaaccaattaaattccatgttggtataaataatagaa |
15570971 |
T |
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| Q |
319 |
ccctacctatgctactcc |
336 |
Q |
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||||||| |||||||||| |
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| T |
15570972 |
ccctacccatgctactcc |
15570989 |
T |
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