View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_82 (Length: 339)

Name: NF3820_low_82
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_82
NF3820_low_82
[»] chr5 (1 HSPs)
chr5 (4-322)||(9602871-9603185)
[»] chr8 (19 HSPs)
chr8 (12-154)||(6364468-6364610)
chr8 (21-154)||(6353604-6353737)
chr8 (21-154)||(6290512-6290645)
chr8 (10-154)||(6275749-6275893)
chr8 (22-154)||(7460677-7460809)
chr8 (33-169)||(6458279-6458415)
chr8 (21-136)||(6392100-6392215)
chr8 (7-154)||(6371294-6371441)
chr8 (19-169)||(6452172-6452322)
chr8 (76-154)||(6322676-6322754)
chr8 (76-146)||(6333243-6333313)
chr8 (222-300)||(6452406-6452484)
chr8 (21-154)||(6425294-6425427)
chr8 (21-143)||(6264935-6265057)
chr8 (21-151)||(6411264-6411394)
chr8 (225-311)||(6458587-6458673)
chr8 (234-298)||(7460979-7461043)
chr8 (234-298)||(6290734-6290798)
chr8 (234-298)||(6353969-6354033)
[»] chr2 (3 HSPs)
chr2 (211-322)||(32023912-32024023)
chr2 (21-151)||(42694396-42694526)
chr2 (76-149)||(42687133-42687206)
[»] chr3 (3 HSPs)
chr3 (10-50)||(35706521-35706561)
chr3 (10-44)||(35722349-35722383)
chr3 (10-46)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 9603185 - 9602871
Alignment:
4 tcatctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9603185 tcatctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattctt 9603086  T
104 cttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaattaattaatttgttttatttacttaagaaaaatgta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
9603085 cttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaatt----aatttgttttatttacttaagaaaaatgta 9602990  T
204 aatgtatttaaggatttgaagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
9602989 aatgtatttaaggatttgaagcttacatcattggtaaagaagatgcgatcttttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaa 9602890  T
304 cggattcatgattgggaat 322  Q
    |||||||||||||||||||    
9602889 cggattcatgattgggaat 9602871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 6364468 - 6364610
Alignment:
12 atcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctg 111  Q
    |||||| | |||||||||||||||||||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||    
6364468 atcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctg 6364567  T
112 tagtagactaatggagctggtgtttgacttggaagatatgtct 154  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||    
6364568 tagtagactaaaggagctggtgtttcacttggaaggtatgtct 6364610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6353604 - 6353737
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    ||||||||||||||| |||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||||||| |||    
6353604 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagtacact 6353703  T
121 aatggagctggtgtttgacttggaagatatgtct 154  Q
    |||||||| ||||||| ||||||||| |||||||    
6353704 aatggagccggtgtttcacttggaaggtatgtct 6353737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6290512 - 6290645
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    ||||||||||||||| |||||||| | |||||||||||| || || | ||| || ||||||||||||| | | | ||||||||||||||| ||||| |||    
6290512 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagtacact 6290611  T
121 aatggagctggtgtttgacttggaagatatgtct 154  Q
    |||||||||||||||| ||||||||| |||||||    
6290612 aatggagctggtgtttcacttggaaggtatgtct 6290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 6275749 - 6275893
Alignment:
10 ggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtc 109  Q
    |||||||| | ||||||||||||||| || ||||| |  |||||||||||||| || | ||| || ||||||||||||| | | | ||| ||||||||||    
6275749 ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc 6275848  T
110 tgtagtagactaatggagctggtgtttgacttggaagatatgtct 154  Q
    | |||||||||||||||| |||||||| |||||||||||||||||    
6275849 tatagtagactaatggaggtggtgtttcacttggaagatatgtct 6275893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 7460677 - 7460809
Alignment:
22 tcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagacta 121  Q
    ||||||||||||||||||||||| | ||| |||||||| || || | ||| || ||||||||||||| | | | ||||||||||||||||||||| ||||    
7460677 tcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttgtctgtagtacacta 7460776  T
122 atggagctggtgtttgacttggaagatatgtct 154  Q
    ||||||||||||||  ||||||||| |||||||    
7460777 atggagctggtgttgcacttggaaggtatgtct 7460809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 6458279 - 6458415
Alignment:
33 atcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggt 132  Q
    |||||||||||||||||| |||  |||||| || | |||||| ||||||||||||||| | ||||| ||||||| ||| || |    |||||||||||||    
6458279 atcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataatgatttaatggagctggt 6458378  T
133 gtttgacttggaagatatgtctgtaacaaagtcaatt 169  Q
    ||||||||||||||||| |||||||||||| ||||||    
6458379 gtttgacttggaagatacgtctgtaacaaattcaatt 6458415  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 6392100 - 6392215
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    |||||||||||||||||||||||| | ||| |||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||||||| | |    
6392100 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagtacagt 6392199  T
121 aatggagctggtgttt 136  Q
    ||||||||||||||||    
6392200 aatggagctggtgttt 6392215  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 6371294 - 6371441
Alignment:
7 tctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 106  Q
    ||||| ||||| | ||||||||||||||| || ||||| |  || ||||||||||| || |  || || ||||||||||||| | | | ||| |||||||    
6371294 tctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttctt 6371393  T
107 gtctgtagtagactaatggagctggtgtttgacttggaagatatgtct 154  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||||    
6371394 gtctgtagtagactaatggagctggtgtttcacttagaaggtatgtct 6371441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 6452172 - 6452322
Alignment:
19 agatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtaga 118  Q
    |||||||| || ||||||||||| || |  || ||||||||||| |||| ||| || ||||||||||||||||| ||||| ||||||| |||  |||       
6452172 agatcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgat 6452271  T
119 ctaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaatt 169  Q
     |||||||||||||||||||||||||||||| | |||||| ||| ||||||    
6452272 ttaatggagctggtgtttgacttggaagatacgcctgtaataaattcaatt 6452322  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 6322676 - 6322754
Alignment:
76 ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtct 154  Q
    ||||||||||||| | | | ||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||    
6322676 ccatctcctcttaaagtcttcaattcttcttctctatagtagactaatggagctggtgtttcacttggaaggtatgtct 6322754  T

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Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 6333243 - 6333313
Alignment:
76 ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaag 146  Q
    ||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||  ||||||||    
6333243 ccatctcctcttaaagtcttcaattcttcttgtctgtagtagactaatggagctggtgtttcgcttggaag 6333313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 6452406 - 6452484
Alignment:
222 aagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaatt 300  Q
    ||||||||||||||||| |||||||||||||  ||||||||| ||||||| ||||||| ||||||||| ||| ||||||    
6452406 aagcttacatcattggtgaagaagatgcgattgtttttgtagcttttgaagttgtaaacccatgaattacaatcaaatt 6452484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6425294 - 6425427
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    ||||||||||||||| |||||||| |  ||||||||||| || || | |||  | ||||||||||||| | | | ||| ||||||||||| ||||| ||     
6425294 atcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacacc 6425393  T
121 aatggagctggtgtttgacttggaagatatgtct 154  Q
    |||||||| ||||||| ||||||||| |||||||    
6425394 aatggagccggtgtttcacttggaaggtatgtct 6425427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 6264935 - 6265057
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    ||||||||| |||||||||||||||||||| ||||||||||| || |  || || ||||||||||||| | | | ||| |||  |||||| ||||||||     
6264935 atcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctatagtagaca 6265034  T
121 aatggagctggtgtttgacttgg 143  Q
    | |||||| ||||||| ||||||    
6265035 agtggagcaggtgtttcacttgg 6265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 6411264 - 6411394
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    |||||||||||||||||||||||| | ||| |||||| | || || | |||||| ||||||||||||| | | | |||||||||||   ||||||| |||    
6411264 atcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtagtacact 6411363  T
121 aatggagctggtgtttgacttggaagatatg 151  Q
    |||||   ||||| |||||||||||| ||||    
6411364 aatggttgtggtgcttgacttggaaggtatg 6411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 6458587 - 6458673
Alignment:
225 cttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaacggattca 311  Q
    |||||||||||||| |||||||||||||| ||||||||  ||||||| ||||||| |||||| || |||| ||| | ||| ||||||    
6458587 cttacatcattggtgaagaagatgcgatcttttttgtaacttttgaagttgtaaacccatgagttacaaataaactgaacagattca 6458673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 7460979 - 7461043
Alignment:
234 ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa 298  Q
    |||| |||||||||||| ||| ||||||| |||||  |||||| ||||||||| |||||||||||    
7460979 ttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgcaaacaaa 7461043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 6290734 - 6290798
Alignment:
234 ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa 298  Q
    |||| |||||||||||| ||  ||||||||||||    ||||||||||||||| |||||||||||    
6290734 ttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaa 6290798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 6353969 - 6354033
Alignment:
234 ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa 298  Q
    |||| |||||||||||| ||  ||||||| |||||  |||||||||||||||| ||||| |||||    
6353969 ttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaa 6354033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 32023912 - 32024023
Alignment:
211 ttaaggatttgaagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaacggattc 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  | ||||||||||||| |||||||||    
32023912 ttaaggatttggagcttacatcattggtaaagaagatgcgatcctttttgtattttttgaagttgtaaatccacaagttgcaaacaaattgaacggattc 32024011  T
311 atgattgggaat 322  Q
    | |||| |||||    
32024012 aagattaggaat 32024023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 42694396 - 42694526
Alignment:
21 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 120  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||| ||| || ||||||||||||| ||| | ||||||||||| ||| || | ||||    
42694396 atcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggact 42694495  T
121 aatggagctggtgtttgacttggaagatatg 151  Q
    |||||||| ||||||| ||| ||||||||||    
42694496 aatggagccggtgtttcactaggaagatatg 42694526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 42687206 - 42687133
Alignment:
76 ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagata 149  Q
    |||||||| |||| ||||||||||||||||| ||| || | ||||| ||||| |||||||| ||||||||||||    
42687206 ccatctccccttaaattttgcaattcttcttctctatacttgactagtggagatggtgtttcacttggaagata 42687133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 35706561 - 35706521
Alignment:
10 ggatcaccaagatcattgtagacatcataatcataaactct 50  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
35706561 ggatctccaagatcattgtagacatcatagtcataaactct 35706521  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 35722383 - 35722349
Alignment:
10 ggatcaccaagatcattgtagacatcataatcata 44  Q
    ||||| |||||||||||||||||||||||||||||    
35722383 ggatctccaagatcattgtagacatcataatcata 35722349  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 35728277 - 35728313
Alignment:
10 ggatcaccaagatcattgtagacatcataatcataaa 46  Q
    ||||| ||||||||||||||||||||||| |||||||    
35728277 ggatctccaagatcattgtagacatcatagtcataaa 35728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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