View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_83 (Length: 338)
Name: NF3820_low_83
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_83 |
 | |
|
| [»] scaffold0071 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0071 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 5850 - 6159
Alignment:
| Q |
11 |
cagagagcacctttactgttatgacatacccagtcgatggagattataagatgtttgcttacacaaattattgtgtttgcttactggtaatgtgtaagtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5850 |
cagagagcacctttactgttatgacatacacagccgatggagattataagatgtttgcttacacaaattattgtgtttacttactagtaatgtgtaagtg |
5949 |
T |
|
| Q |
111 |
taggatgactgcttaacttcaaatgttattttggcattagtgtagcagaactactgagcaatcattgatgtctattgtgtaagatagaaacaccttggaa |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5950 |
taggatgactgtttaacttcaaatgttattttggcattagtgtagcagaactgctgagcaatcattgatgtctattgtgtaacatagaaacaccttggaa |
6049 |
T |
|
| Q |
211 |
atctaatttaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattcag |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6050 |
atctaattgaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattgag |
6149 |
T |
|
| Q |
311 |
caccgtaaat |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
6150 |
caccgtaaat |
6159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 15456341 - 15456032
Alignment:
| Q |
11 |
cagagagcacctttactgttatgacatacccagtcgatggagattataagatgtttgcttacacaaattattgtgtttgcttactggtaatgtgtaagtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
15456341 |
cagagagcacctttactgttatgacatacacagccgatggagattataagatgtttgcttacacaaattattgtgtttacttactagtaatgtgtaagtg |
15456242 |
T |
|
| Q |
111 |
taggatgactgcttaacttcaaatgttattttggcattagtgtagcagaactactgagcaatcattgatgtctattgtgtaagatagaaacaccttggaa |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15456241 |
taggatgactgtttaacttcaaatgttattttggcattagtgtagcagaactgctgagcaatcattgatgtctattgtgtaacatagaaacaccttggaa |
15456142 |
T |
|
| Q |
211 |
atctaatttaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattcag |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15456141 |
atctaattgaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattgag |
15456042 |
T |
|
| Q |
311 |
caccgtaaat |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
15456041 |
caccgtaaat |
15456032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 321
Target Start/End: Complemental strand, 8160036 - 8159920
Alignment:
| Q |
205 |
ttggaaatctaatttaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgt |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||| | ||||||| || | ||||||| | ||||| |
|
|
| T |
8160036 |
ttggaaatctaattgaccaacttatgagttccttgccataattcaccttgtggtacgcatagcattaatgcttttaactaaccaatgataaatttcatgt |
8159937 |
T |
|
| Q |
305 |
attcagcaccgtaaatt |
321 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
8159936 |
attgagcaccgtaaatt |
8159920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University