View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_84 (Length: 335)
Name: NF3820_low_84
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_84 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 33536437 - 33536119
Alignment:
| Q |
16 |
tcatgcgtcactgaagatgagagcgtagtagtcgcatatggagatcggggaacctcctcctcctcctgagagtccggaaattactgctcaactacatcta |
115 |
Q |
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| T |
33536437 |
tcatgcgtcactgaagatgagagcgtagcagtcgcatctggagatcggggaaccacctcctcctcctgggagtccggaaattactgctcaactacatcta |
33536338 |
T |
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| Q |
116 |
aatgcacatcaacgtgcgctacttgggaagccaattacaataccgggctagccatgtagatttcttttgttaacctttaacaattaaaccaacaaatttg |
215 |
Q |
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| T |
33536337 |
aatgcacatcaacgttcactacttgggaagccaattacaataccgggctagccatgtagattcctttttttaacctttaacaattaaaccaacaaattta |
33536238 |
T |
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| Q |
216 |
aagnnnnnnnnncaacccattttaattagaaggatttttgactttcaataagcatcttaagacatctccataacttagcctatttaagtcatgaactaat |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33536237 |
aag-ttttttttcaacccattttaattagaaggatttttgactttcaataagcatattaagacatctccataacttagcctatttaagtcatgaattaat |
33536139 |
T |
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| Q |
316 |
tctctaactcgaattctttt |
335 |
Q |
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|||||||||||||||||||| |
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| T |
33536138 |
tctctaactcgaattctttt |
33536119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 28784342 - 28784439
Alignment:
| Q |
16 |
tcatgcgtcactgaagatgagagcgtagtagtcgcatatggagatcggggaacctcctcctcctcctgagagtccggaaattactgctcaactacatc |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||||||| | ||||||| |||||||| |
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| T |
28784342 |
tcatgcgtcactgaggatgagagcgtagtagtcgcatccggagaccggggaaccacctcctcctcacgggagtccggacttaactgctctactacatc |
28784439 |
T |
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