View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_85 (Length: 334)
Name: NF3820_low_85
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 10515635 - 10515775
Alignment:
| Q |
29 |
ctctcaaataaacaaacttacaatatctcgagaagcataatcttttctatgtcaccaaaaaataataatatattcttttaacatgtcatttatagat-aa |
127 |
Q |
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| T |
10515635 |
ctctcaaataaacaaacttagtatatctcgagaagcataatcttttctatggcaccaaaaaataataatatatttttttaacaagtcatttatagataaa |
10515734 |
T |
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| Q |
128 |
aaagatgtttcttaaacacctcaataaatgtatacagctta |
168 |
Q |
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| T |
10515735 |
aaagatgtttcttaaacacctcaataaatgtatacagctta |
10515775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 10515843 - 10515923
Alignment:
| Q |
236 |
aaatgaaatgttgaacgagtgtaagaaaaattaaaatatccaagtatcattgttgacatagatacacaatgatttacaact |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10515843 |
aaatgaaatgttgaacgagtgtaagaaaaattaaaatatccaagtatcattgttgacatagatacacaatgatttacaact |
10515923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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