View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_87 (Length: 330)
Name: NF3820_low_87
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_87 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 35635095 - 35635395
Alignment:
| Q |
13 |
tgagattgccacggtaaacaactgtttctcctccgatcaacctagttttattttgggtcttctaacctagttttacgtctgactttttaacccttgttga |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35635095 |
tgagattgccaccgtaaacaactgtttctcctcc--tcaacctagttttattttgggtcttctaacctagttttacgtctgactttttaacccttgttga |
35635192 |
T |
|
| Q |
113 |
acaccgatttgataaaagatagtcgaaatacaaatcaataataaatcttgttagggcatatattttgaatttgaacccgtcaaataattcagaaaattag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35635193 |
acaccgatttgataaaagatagtcgaaatacaaatcaataataaatctttttagggcatatattttgaatttgaacccgtcaaataattcagaaaattag |
35635292 |
T |
|
| Q |
213 |
catacaataacttaacatggattcttt-cnnnnnnnnnnnnnnnncttaacaaggataatgggagtacaataacaataaaattataaaattcaacacgga |
311 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35635293 |
catacaataacttaacatggattctttccaaaaaaaaaaaaaaaacttaacaaggataatgggagtacaataacaataaaattataaaattcaacacgga |
35635392 |
T |
|
| Q |
312 |
tat |
314 |
Q |
| |
|
||| |
|
|
| T |
35635393 |
tat |
35635395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University