View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_88 (Length: 319)
Name: NF3820_low_88
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 3726570 - 3726284
Alignment:
| Q |
13 |
aatatactaacatagttaacacataaaacaaaaataaac-aaagctttcacatttttaatgtactttatttatgaaagactaaacattgagtaacattta |
111 |
Q |
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| T |
3726570 |
aatatactaacatagttaacagataaaacaaaaataaaccaaagctttcacatttttaatgtactttatttatgaaagactaaacattgagtaacattta |
3726471 |
T |
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| Q |
112 |
gtagatttttaggaaagatagaaaaataaagtgaattgtgatattacaattttgagtaactattaccgttttgtgttgttataaatatatttttgtcaat |
211 |
Q |
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| T |
3726470 |
gcagatttttaggaaagacagaaaaataaagtgaattgtgatattacaattttgagtaactattaccgttttgtgttgttataaatatatttttgtcaat |
3726371 |
T |
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| Q |
212 |
ttcttttgtgacattaggactaggagagtgttcctcctttctannnnnnngtcccaaatccaaaggtacataggagagtggtcggtacttggt |
304 |
Q |
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| T |
3726370 |
ttcttttgtgacatt------aggagagtgttcctcctttctatttttttgtcccaaatccaaaggtacataggagagtggtcggtacttggt |
3726284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 3721154 - 3721028
Alignment:
| Q |
123 |
ggaaagatagaaaaataaagtgaattgtgatattacaattttgagtaactattaccgttttgtgttgttataaatatatttttgtcaatttcttttgtga |
222 |
Q |
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| T |
3721154 |
ggaaagacagaaaactaaagtgaactgtgatcttatgattttgagtaactgttaccgttattcattgttataaatatattcttgtcaatttcttttgtga |
3721055 |
T |
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| Q |
223 |
cattaggactaggagagtgttcctcct |
249 |
Q |
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| T |
3721054 |
cattaggactaggagattgtttctcct |
3721028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 3721276 - 3721197
Alignment:
| Q |
25 |
tagttaacacataaaacaaaaataaac-aaagctttcacatttttaatgtactttatttatgaaagactaaacattgagt |
103 |
Q |
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|||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3721276 |
tagttaacacataagacaaaaataaactaaaattttcccatttttaatgtactttatttatgaaagattaaacattgagt |
3721197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 3727951 - 3727852
Alignment:
| Q |
155 |
ttacaattttgagtaactattaccgttttgtgttgttataaatatatttttgtcaatttcttttgtgacattaggactaggagagtgttcctcctttcta |
254 |
Q |
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| T |
3727951 |
ttacaattttgagtaactgttacagttatttgttgttataaatatattcttttcaatttcatttgtgacattacgattatgggagtgttcctcctctcta |
3727852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 3728026 - 3727955
Alignment:
| Q |
13 |
aatatactaacatagttaacacataaaacaaaaataaa-caaagctttcacatttttaatgtactttattta |
83 |
Q |
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||||||||||| |||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||||||||| |
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| T |
3728026 |
aatatactaacgtagttaactcataaaataaaaataaaccaaaactttcccatttttaatgtactttattta |
3727955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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