View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_89 (Length: 317)
Name: NF3820_low_89
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 7522839 - 7523144
Alignment:
| Q |
19 |
gcttaatgtcaaatattcatacatacttctccaaaacaatgttcttgatcaatgtgaagacacttccataaagcattggtgtaggtgctctaagacctct |
118 |
Q |
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| T |
7522839 |
gcttaatatcaaatattcatacatacttctccaaaacaatgttcttgatcaatgtgaagacacttccataaagcattggtgtaggtgctctaagacctct |
7522938 |
T |
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| Q |
119 |
taagtaaggtctcaagttcatta--------------------ttttatgatagttcgtttaaaagagttaatcaccgacaagttggttgat--acttca |
196 |
Q |
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| T |
7522939 |
taagtaaggtctcaagttcattatttatgataggaaaaactttttttaaaatagttcgtttaaaagagttgatcaccgacaagttggttgatacacttca |
7523038 |
T |
|
| Q |
197 |
caccaaatatcatacaaaaaagcataagataattaagaactttggtagttacccatttgatgaggtatttcaaaaacaaaacttgagttcaaatattact |
296 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523039 |
caccaaatatcatacaaaaaagc-----ataattaagaactttggtagttacccatttgatgaggtatttcaaaaacaaaacttgagttcaaatattact |
7523133 |
T |
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| Q |
297 |
cactacctttg |
307 |
Q |
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|||||||||| |
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| T |
7523134 |
tactacctttg |
7523144 |
T |
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