View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_91 (Length: 310)
Name: NF3820_low_91
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_91 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 11126654 - 11126353
Alignment:
| Q |
9 |
acatcatcaaatagataatccacctccgcgcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcatcatctctta |
108 |
Q |
| |
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|||||||||||||||| || |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11126654 |
acatcatcaaatagatgattcacctctgtgcttatatcatcaaatatcttccctacatcgcacagatttctctgaaattcattggttgcatcatctttta |
11126555 |
T |
|
| Q |
109 |
cttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaagatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11126554 |
cttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttcttcactaaattttcgctgattttaagatc |
11126455 |
T |
|
| Q |
209 |
aagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
11126454 |
aagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccgtgtatggcttagcatcaccatataaacaagacaagaaaactccacat |
11126355 |
T |
|
| Q |
309 |
ac |
310 |
Q |
| |
|
|| |
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|
| T |
11126354 |
ac |
11126353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 8869359 - 8869660
Alignment:
| Q |
9 |
acatcatcaaatagataatccacctccgcgcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcatcatctctta |
108 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| |
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| T |
8869359 |
acatcatcaaatagatgatccaccttcgcgcttatatcatctaatatcttccctacaccgcacagatttctctgcaattccttggttgcatcatctttta |
8869458 |
T |
|
| Q |
109 |
cttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaagatc |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||| |||||| |||||||| ||||| ||||| |||||||||||||| |
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| T |
8869459 |
cttcatcgccagcaacaaggcgagcaacaaatttgttcatttctttgatctcactaaagcatggcattttcttcactaacttttcactgattttaagatc |
8869558 |
T |
|
| Q |
209 |
aagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccacat |
308 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
8869559 |
aagtgtggaaactatagaattttcaaacccaccaacaatttttcttagctccatgtatggcttagcatcaccataaaaataagacaagagaactccacat |
8869658 |
T |
|
| Q |
309 |
ac |
310 |
Q |
| |
|
|| |
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|
| T |
8869659 |
ac |
8869660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 8866078 - 8866381
Alignment:
| Q |
9 |
acatcatcaaatagataatccacctccgcgcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcat--catctct |
106 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| | |||||| ||||||| ||||||||||||||| |||||||||| ||||| | |
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|
| T |
8866078 |
acatcatcaaatagatgatccacctccttgcttatatcatcaaatatcatccctatctcgcacaaatttctctgaaattccttggttgcatatcatcttt |
8866177 |
T |
|
| Q |
107 |
tacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaaga |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| |||||||| ||||| |||||| ||||||| ||| |
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|
| T |
8866178 |
tacttcatcaccagcaacaacgcgagcaacaaaattctttttctctttgatctcactaaatcatggcattttcttcactaacttttcggtgattttgaga |
8866277 |
T |
|
| Q |
207 |
tcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccac |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||| ||||||| |
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|
| T |
8866278 |
tcaagtgtggaaactatagaactttcaaaaccaccagcaatttttcttagctccatgtatggcttagcatcaacatataaacaagataagaaaactccac |
8866377 |
T |
|
| Q |
307 |
atac |
310 |
Q |
| |
|
|||| |
|
|
| T |
8866378 |
atac |
8866381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 10893716 - 10894019
Alignment:
| Q |
9 |
acatcatcaaatagataatccacctccgcgcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcat--catctct |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||| |||| |||||| || ||||| | |
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| T |
10893716 |
acatcatcaaatagatgatccacctccgtgcttatatcataaaatatcttccctacctcgcacagatttctctggtattccttggttaaatatcatcttt |
10893815 |
T |
|
| Q |
107 |
tacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||| ||||| |||| | ||||||| ||| |
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|
| T |
10893816 |
tacttcatcaccagcaacaaggcgagcaacaaaattctttttctctttgatctcactaaatcatggcattttcttcactaactttttggtgattttgaga |
10893915 |
T |
|
| Q |
207 |
tcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccac |
306 |
Q |
| |
|
| |||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||| |||| |||| ||||||| |
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| T |
10893916 |
ttaagtgtggaaactatagaactttcaaaaccaccagcaatttttcttagctccatgtatggcatagcatcaacatataaacaagataagaaaactccac |
10894015 |
T |
|
| Q |
307 |
atac |
310 |
Q |
| |
|
|||| |
|
|
| T |
10894016 |
atac |
10894019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 38 - 310
Target Start/End: Complemental strand, 11144140 - 11143868
Alignment:
| Q |
38 |
gcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcatcatctcttacttcatcaccagcaacaaggcgagcaaca |
137 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11144140 |
gcttatatcatcaaatatcatccctatctcgcacaaatttctctgaaattccttggttgcatcatcttttacttcatcaccagcaacaaggcgagcaaca |
11144041 |
T |
|
| Q |
138 |
aaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacc |
237 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||| |||||||| |||| |||||| ||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
11144040 |
aaattctttttctctttgatctcactaaatcatggcattttcttcactaccttttcggtgattttgagatcaagtgtggaaactatagaactttcaaaac |
11143941 |
T |
|
| Q |
238 |
caccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccacatac |
310 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||| |||| |||||||| |||| |||| ||||||||||| |
|
|
| T |
11143940 |
caccagcaatttttcttatctccatgtatggcttagtatcaacatataaacaagataagaaaactccacatac |
11143868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 67 - 310
Target Start/End: Complemental strand, 11142372 - 11142129
Alignment:
| Q |
67 |
cgcacagatttctctgaaattcattggttgcatcatctcttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaac |
166 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||||| ||||| || |||||||||||||||| |
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|
| T |
11142372 |
cgcacagatttctctgaaattccttggttgcatcatcttttacttcatcgcctgcaacaaggcgagcaacaaatttgttcatttctttgatctcactaaa |
11142273 |
T |
|
| Q |
167 |
gcatgggattttctttactaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtat |
266 |
Q |
| |
|
|||||| |||||||| |||| ||||| ||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
11142272 |
gcatggcattttcttcactatcttttcactgattttatgatcaagtgtggaaactatagaattttcaaacccaccaacaatttttcttagctccatgtat |
11142173 |
T |
|
| Q |
267 |
ggcttagcatcaccatataaaaaagacaagagtactccacatac |
310 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
11142172 |
ggcttagcatcaccataaaagcaagacaagagaactccacatac |
11142129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 11194042 - 11194343
Alignment:
| Q |
9 |
acatcatcaaatagataatccacctccgcgcttatatcatcaaataccttccctacatcgcacagatttctctgaaattcattggttgcatcatctctta |
108 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| || |||||||| |||| ||| || |||| |||||||||| ||| ||| | ||||| ||||| |
|
|
| T |
11194042 |
acatcatcaaatagatgatctacctccttgcttagataatcaaatagcttctctagctcagacagctttctctgaagttccttgtcttcatcaagtctta |
11194141 |
T |
|
| Q |
109 |
cttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttctttactaaattttcgctgattttaagatc |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||| |||||| |||| |||||||||||||| |||| |
|
|
| T |
11194142 |
tttcatcaccagcaacaaggcgagtaacaaaattatttatctcttcgatctcacaaaagcatggcgttttctgcactagcttttcgctgattttgagatt |
11194241 |
T |
|
| Q |
209 |
aagtgtggaaactatacaactttcaaacccaccaccaatttttcttagcttcatgtatggcttagcatcaccatataaaaaagacaagagtactccacat |
308 |
Q |
| |
|
||| |||||||||| || |||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
11194242 |
aagcatggaaactattgaattttcaaacccgccagcaatttttcttagctccatgtatggcttaacatcaccatataaacaagacaagaaaactccacat |
11194341 |
T |
|
| Q |
309 |
ac |
310 |
Q |
| |
|
|| |
|
|
| T |
11194342 |
ac |
11194343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 11142410 - 11142374
Alignment:
| Q |
11 |
atcatcaaatagataatccacctccgcgcttatatca |
47 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
11142410 |
atcatcaaatagatgatccaccttcgcgcttatatca |
11142374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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