View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_93 (Length: 306)
Name: NF3820_low_93
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_93 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 1174533 - 1174812
Alignment:
| Q |
11 |
caaaggtattgatgtccatggatatacaatagcatttatgtaagaaattctttctaaccactttaatcctcctttatatccataccaaataggacaatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1174533 |
caaaggtattgatgtccatggatatacaatagcatttatgtaagaaattctttctaaccactttaatcctcctttatatccataccaaataggacaatgt |
1174632 |
T |
|
| Q |
111 |
ttactcatgaatatgtcaatggatccaagggcccattgaaagacttgttgtagaccattagaaaggttatttgatgaagatactttaaatgcagttcttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1174633 |
ttactcatgaatatgtcaatggatccaagggcccattgaaagacttgttgtagaccattagaaaggttatttgatgaagatactttaaatgcagttcttt |
1174732 |
T |
|
| Q |
211 |
caggaatgcaatatatagatctccatccatgacaatgcattttgaaacctgttaatatatcttctgtaactgaaccatag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1174733 |
caggaatgcaatatatagatctccatccatgacaatgcattttgaaacctgttaatatatcttctgtaactgaaccatag |
1174812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 44375833 - 44375929
Alignment:
| Q |
193 |
ctttaaatgcagttctttcaggaatgcaatatatagatctccatccatgacaatgcattttgaaacctgttaatatatcttctgtaactgaaccata |
289 |
Q |
| |
|
||||||| |||| |||| ||| ||||| |||| |||| ||| ||||||| |||||| || ||||||||||| ||||||||||| || |||||||| |
|
|
| T |
44375833 |
ctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatcttctgtgacggaaccata |
44375929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University