View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_97 (Length: 300)

Name: NF3820_low_97
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_97
NF3820_low_97
[»] chr7 (2 HSPs)
chr7 (1-156)||(21477373-21477528)
chr7 (157-281)||(21477217-21477347)
[»] chr4 (12 HSPs)
chr4 (3-69)||(27478969-27479036)
chr4 (3-69)||(27486029-27486096)
chr4 (3-40)||(27508839-27508876)
chr4 (3-66)||(27506685-27506749)
chr4 (15-69)||(27513862-27513917)
chr4 (3-40)||(27524511-27524548)
chr4 (3-35)||(27468448-27468480)
chr4 (3-35)||(27475700-27475732)
chr4 (3-35)||(27489947-27489979)
chr4 (3-31)||(27497447-27497475)
chr4 (15-66)||(27501316-27501368)
chr4 (3-35)||(27514878-27514910)
[»] chr5 (2 HSPs)
chr5 (3-69)||(1754675-1754742)
chr5 (3-69)||(1756843-1756910)
[»] chr8 (2 HSPs)
chr8 (6-39)||(21608247-21608280)
chr8 (92-141)||(33319520-33319569)
[»] chr3 (2 HSPs)
chr3 (6-39)||(38032272-38032305)
chr3 (6-39)||(50913486-50913519)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21477528 - 21477373
Alignment:
Q  1 ggaagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcatacttgaaaacaggcatctagagaatttgtttcctattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477528 ggaagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcatacttgaaaacaggcatctagagaatttgtttcctattg 21477429  T
Q  101 attaagcatcaaaaagttctattaaccataacataacaagcgtctgaagcacaatt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477428 attaagcatcaaaaagttctattaaccataacataacaagcgtctgaagcacaatt 21477373  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 21477347 - 21477217
Alignment:
Q  157 ctctaattaagaattataaacttaacctaaacaagctataaatcaattgagtaaa------ataaaattgcacaaaacgaaattatatatgatcaattgc 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||    
T  21477347 ctctaattaagaattataaacttaacctaaacaagctataaatcaattgagtaaactatcaataaaattgcacaaaacgaaattatatatgatcaattgc 21477248  T
Q  251 gtcataagataaaccgaattgcacaagaatt 281  Q
    |||||||||||||||||||||||||||||||    
T  21477247 gtcataagataaaccgaattgcacaagaatt 21477217  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27479036 - 27478969
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttg-tatcccaatatcatacttgaa 69  Q
    |||||||||||||||||||||||||||||||||  ||  | ||||| | |||||||||||||||||||    
T  27479036 aagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaa 27478969  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27486096 - 27486029
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttg-tatcccaatatcatacttgaa 69  Q
    |||||||||||||||||||||||||||||||||  ||  | ||||| | |||||||||||||||||||    
T  27486096 aagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaa 27486029  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27508839 - 27508876
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgac 40  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  27508839 aagggctatgttgcagtgtatgttggagagaaactgac 27508876  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 27506685 - 27506749
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatactt 66  Q
    ||||||||||||||||| ||||| |||||||||  ||| | |||||| |||||||||||||||||    
T  27506685 aagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatactt 27506749  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 27513917 - 27513862
Alignment:
Q  15 gcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatacttgaa 69  Q
    ||||||||||| |||||||||||||  | |||||| ||||||||||||||||||||    
T  27513917 gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaa 27513862  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27524511 - 27524548
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgac 40  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  27524511 aagggctacgttgcagtgtatgttggagagaaactgac 27524548  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 27468480 - 27468448
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaa 35  Q
    |||||||||||||| ||||||||||||||||||    
T  27468480 aagggctatgttgcggtgtatgttggagagaaa 27468448  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 27475732 - 27475700
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaa 35  Q
    |||||||||||||| ||||||||||||||||||    
T  27475732 aagggctatgttgccgtgtatgttggagagaaa 27475700  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 27489947 - 27489979
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaa 35  Q
    ||||||||||||| |||||||||||||||||||    
T  27489947 aagggctatgttgtagtgtatgttggagagaaa 27489979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 27497475 - 27497447
Alignment:
Q  3 aagggctatgttgcagtgtatgttggaga 31  Q
    |||||||||||||||||||||||||||||    
T  27497475 aagggctatgttgcagtgtatgttggaga 27497447  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 27501316 - 27501368
Alignment:
Q  15 gcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatactt 66  Q
    ||||| |||||||||||| |||||| || |||||| |||||||||||||||||    
T  27501316 gcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatactt 27501368  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 27514878 - 27514910
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaa 35  Q
    |||||||||||||| ||||||||||||||||||    
T  27514878 aagggctatgttgcggtgtatgttggagagaaa 27514910  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 1754675 - 1754742
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatacttgaa 69  Q
    ||||||||||||||||||||| |||||||||||  || || |  ||| ||||||||||||||||||||    
T  1754675 aagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaa 1754742  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 1756910 - 1756843
Alignment:
Q  3 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatacttgaa 69  Q
    ||||||||| |||||||| ||||||||||||||  ||  | |||||| ||||||||||||||||||||    
T  1756910 aagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaa 1756843  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 21608247 - 21608280
Alignment:
Q  6 ggctatgttgcagtgtatgttggagagaaaatga 39  Q
    |||||| |||||||||||||||||||||||||||    
T  21608247 ggctatcttgcagtgtatgttggagagaaaatga 21608280  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 33319520 - 33319569
Alignment:
Q  92 ttcctattgattaagcatcaaaaagttctattaaccataacataacaagc 141  Q
    |||||||||||||||||| | ||||||| ||||| ||||||| |||||||    
T  33319520 ttcctattgattaagcataacaaagttcaattaatcataacaaaacaagc 33319569  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 38032272 - 38032305
Alignment:
Q  6 ggctatgttgcagtgtatgttggagagaaaatga 39  Q
    |||||| |||||||||||||||||||||||||||    
T  38032272 ggctatcttgcagtgtatgttggagagaaaatga 38032305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 50913486 - 50913519
Alignment:
Q  6 ggctatgttgcagtgtatgttggagagaaaatga 39  Q
    |||||| |||||||||||||||||||||||||||    
T  50913486 ggctatcttgcagtgtatgttggagagaaaatga 50913519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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