View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_98 (Length: 298)
Name: NF3820_low_98
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 116 - 281
Target Start/End: Original strand, 51457633 - 51457798
Alignment:
| Q |
116 |
tcatccaccaactaaatcatcggttcacccaagggcaaacacccctcactactatcactcatcatcatctgccctagctaccaatgttcacactcctgta |
215 |
Q |
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| T |
51457633 |
tcatccaccaactaaatcatcggttcacccaagggcaaacacccctcaccactatcactcatcatcatctgccc---ctaccaatgttcacactcctgta |
51457729 |
T |
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| Q |
216 |
caccctcaccctac---taaacctccagcccatcaccaccatcatcatcaccctcctgctaatgcccct |
281 |
Q |
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| T |
51457730 |
caccctcaccctacttataaacctccagcccatcaccaccatcatcatcaccctcctgctcatgcccct |
51457798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 51457476 - 51457572
Alignment:
| Q |
22 |
cctctttcattgcatttgctcaagagctttattctggtcaccccgcttaccctcctcacgcaccagcaccacttcacccaccggcaaacactcctca |
118 |
Q |
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| T |
51457476 |
cctctttcattgcatttgctcaagagctttattctggtcaccccgcttaccctcctcacgcaccagcaccacttcacccaccggcaaacgctcctca |
51457572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 3175973 - 3175886
Alignment:
| Q |
199 |
atgttcacactcctgtacaccctc---accctactaaacctccagcccatcaccaccatcatcatcaccctcctgctaatgcccctat |
283 |
Q |
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| T |
3175973 |
atgttcacactcctttacatcctcgtcatcctgcaaaacctccaacccatcatcatcatcatcatcactctcctgctcatgcccctat |
3175886 |
T |
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