View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3821_high_1 (Length: 410)
Name: NF3821_high_1
Description: NF3821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3821_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 6920363 - 6920558
Alignment:
| Q |
36 |
caatgggtaatgataaacaactctctgtctgcttgtatttgttttagggaaagaaggtgaactatgtgccattcaaagtaaagtgtattgcatgcatccg |
135 |
Q |
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| T |
6920363 |
caatgggtaatgataaa-aactctctgtctgcttgtatttgttttagggaaagaaggtgaaccatgtgccattcaaagtaaagtgcattgcatgcatccg |
6920461 |
T |
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| Q |
136 |
gggaaaaaggcgaacaaatactcataacttcaaacgaaggataactctttcctaaaaggaatgttcatgctaatattccaaactagcttggtccaaa |
232 |
Q |
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| T |
6920462 |
gggaaaaaggcgaacaaatactcataacttcaaacgaaggataactctttcctaaaaggaatgttcatgctaatattccaaactagcttggcccaaa |
6920558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 239 - 395
Target Start/End: Original strand, 6920589 - 6920745
Alignment:
| Q |
239 |
cataggctgattttagagaaagctgttcataatcagcttgagaccaaagtaattcatcactcctttgctccaatggaatgatattgtattcaacaatatt |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
6920589 |
cataggctgattttagagaaagctgttcataatcagcttgagaccaaagtaattcatcactcctttgctccaatggaatgatagtgttttcaacaatatt |
6920688 |
T |
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| Q |
339 |
caaaagagaaggataagcttgctgcaacaagcttatcctgtataggtatagcacgag |
395 |
Q |
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| T |
6920689 |
caaaagagaaggataagcttgctgcaacaagcttatcctgtataggtatagcacgag |
6920745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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