View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3821_low_2 (Length: 299)
Name: NF3821_low_2
Description: NF3821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3821_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4782769 - 4783057
Alignment:
| Q |
1 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttgtatgcatatagaatttgtttgtgtgggcattgttg |
100 |
Q |
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| T |
4782769 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttttatgcatatagaatttgtttgtgtgggcattgttg |
4782868 |
T |
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| Q |
101 |
atgttgttttcaacacgtcagttatcctattcaaaattgttaagcataagaaaatgaataaataaatagaaacacatgaaagtttcactcaatgatgtaa |
200 |
Q |
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| T |
4782869 |
atgttgttttcaacacgtcagttatcctattcaaaattgttaagcataagaaaatgaataaataaattgaaacacatgaaagtttcactcaatgatgtaa |
4782968 |
T |
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| Q |
201 |
tacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatggtggcgaatgaattttattatttttactttcccctatg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
4782969 |
tacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatggtggcgaatgaatttgattatttttactttcctctatg |
4783057 |
T |
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