View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_high_12 (Length: 239)
Name: NF3822_high_12
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 39387948 - 39387869
Alignment:
| Q |
69 |
attcaaggaatccaaggacaccaggtcagtcaaaggcaacggaccacccatattggataaattactacatttccaaccta |
148 |
Q |
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| T |
39387948 |
attcaaggaatccaagggcaccaggtcagtcaaaggcaacggaccacccatattggataaattactacatttccaaccta |
39387869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 39387548 - 39387502
Alignment:
| Q |
180 |
aacaatctgttgtcttcatatgtaccaatgacaaaattaattaacac |
226 |
Q |
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| T |
39387548 |
aacaatccgttgtcttcatatgtaccaatgacaaaattaattaacac |
39387502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 39387975 - 39387943
Alignment:
| Q |
25 |
tagacatgttaattatatatggtgacaattcaa |
57 |
Q |
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| T |
39387975 |
tagacatgttaattatatatggtgacaattcaa |
39387943 |
T |
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