View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_high_9 (Length: 317)
Name: NF3822_high_9
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36250950 - 36251168
Alignment:
| Q |
1 |
gtcattgttcgaaatgatgaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagagagg |
100 |
Q |
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| T |
36250950 |
gtcattgttcgaaatgatgaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagagagg |
36251049 |
T |
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| Q |
101 |
tataatcaattttatcttttatttttcttcttcatttgtgcaatctgaaatttctgtaatatgaatagcttaataaaacaagacgttttggactgttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36251050 |
tataatcaattttatcttttatttttcttcttcatttgtgcaatctgaaatttctgtaatatgaatagcttaataaaacaagacgttttggactgttaat |
36251149 |
T |
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| Q |
201 |
cttgatatcatgccacttt |
219 |
Q |
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||||||||||||| ||||| |
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| T |
36251150 |
cttgatatcatgctacttt |
36251168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 36226073 - 36225918
Alignment:
| Q |
4 |
attgttcgaaatgat---gaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagagagg |
100 |
Q |
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||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
36226073 |
attgttcgaaatgatcatgaagttgttgtaagcactcataacatggttttaagaaacaaagatcccactgctcatgctgagatcactgctataagggagg |
36225974 |
T |
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| Q |
101 |
tata---atcaattttatcttttatttttcttcttcatttgtgcaatctgaaattt |
153 |
Q |
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| T |
36225973 |
taaaaatattaattttaacttttatttttcttgttcttttgtgtaatctgacattt |
36225918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 36231911 - 36232003
Alignment:
| Q |
6 |
tgttcgaaatgatgaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagaga |
98 |
Q |
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||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
36231911 |
tgttcaaaatgatgaaatagttgttagcagtcataacatggttttaagaaacaaagatcccacggctcatgctgaggttactgttatgagaga |
36232003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 36234526 - 36234624
Alignment:
| Q |
4 |
attgttcgaaatgatgaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagagaggta |
102 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||||||||||||| | | |||||||||||||||| |
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| T |
36234526 |
attgttcgaaatgacgaagttattgtaagctgtcataacatgtttttaagaaacaaagagccaactgctcatgctgagatcattgctataagagaggta |
36234624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 367296 - 367197
Alignment:
| Q |
1 |
gtcattgttcgaaatgatgaagtagttgtaagctgtcataacatggttttaagaaacaaagatcccactgctcatgctgaggttactgctataagagagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
367296 |
gtcattgttcgaaatgatgaagtagttgtaagctttcataacatggttttaagaaacaaagatcccactgctcatgctgagattattcctataagagagg |
367197 |
T |
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