View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3822_low_1 (Length: 840)
Name: NF3822_low_1
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 781; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 12 - 824
Target Start/End: Complemental strand, 1482261 - 1481450
Alignment:
| Q |
12 |
agcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatctccacagttcccagtctctccctcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1482261 |
agcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatctcctcagttcccagtctctccctcctt |
1482162 |
T |
|
| Q |
112 |
ctctcaatcacctaaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaaatataaacactcatcatcacataacaaa |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1482161 |
ctctcaatcgcctaaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaa-tataaacactcatcatcacataacaaa |
1482063 |
T |
|
| Q |
212 |
tcaacaaaacaacagaatattaacaacaataacttaattcataatgtaactaacttgtaaaacaaatttagacaatgtttgtcttattgtgatagaattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482062 |
tcaacaaaacaacagaatattaacaacaataacttaattcataatgtaactaacttgtaaaacaaatttagacaatgtttgtcttattgtgatagaattt |
1481963 |
T |
|
| Q |
312 |
agatttgtgaataagattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattttaacagattatctttag |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1481962 |
agatttgtgaatacgattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattttaacagattatctttag |
1481863 |
T |
|
| Q |
412 |
tcatcatgttgagtcactacaaacgacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcgagtataacagatatagaa |
511 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1481862 |
tcatcatgttgagtcactacaaactacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcgagtataacagatatagaa |
1481763 |
T |
|
| Q |
512 |
accagaagagccaagacagtaacgtatttaacaacctccgtatcactactgaaactgtagccataaacatggcagcatgcaaagagggttgcgctcacta |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1481762 |
accagaagagccaagacagtaacgtatttaacaacctccgtatcactactgaaaatgtagccataaacatggcagcatgcaaagagggttgcgctcacta |
1481663 |
T |
|
| Q |
612 |
tacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgcttcaaatggattaccagctcctaattcatttgaaacccttgtgctata |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1481662 |
tacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgcttcaaatggattaccagctcctaattcatttgaaacccttgtgctata |
1481563 |
T |
|
| Q |
712 |
aaccaatcaattactaagatttgacccgtgcgacgcaggtctatttgaaaatcacaaacaaacttaataagtatagaatattatgattaaaattatccta |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481562 |
aaccaatcaattactaagatttgacccgtgcgacgcgggtctatttgaaaatcacaaacaaacttaataagtatagaatattatgattaaaattatccta |
1481463 |
T |
|
| Q |
812 |
atatgcatccaac |
824 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1481462 |
atatgcatccaac |
1481450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 36717049 - 36716878
Alignment:
| Q |
12 |
agcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatctccacagttcccagtctctccctcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
36717049 |
agcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctcctt |
36716950 |
T |
|
| Q |
112 |
ctctcaatcacctaaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaa |
183 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||| |||| ||||||| |||| |||| |||||||| |
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|
| T |
36716949 |
ctctcaatcgcctaaacacaatattaacaacactaatttagttcatattcaaattaataagatggaactaaa |
36716878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 34728685 - 34728641
Alignment:
| Q |
354 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
399 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
34728685 |
taactaacatgtaacta-cttaaacaatattcaactaattctaaca |
34728641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 366 - 712
Target Start/End: Complemental strand, 49191238 - 49190892
Alignment:
| Q |
366 |
aactatcttaaacaatattcaactaattttaacagattatctttagtcatcatgttgagtcactacaaacgacgtagaaaccttgtatactgagcaattt |
465 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||| |
|
|
| T |
49191238 |
aactatcttaaacaatattcaactaattctagcatattatctttagtgatcatgttgagtcactacaaacaacatagaaaccttgcatacggagcaattt |
49191139 |
T |
|
| Q |
466 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaacctccgtatcactactgaaa |
565 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
49191138 |
acctgcgagaacgccttgtatgctgtcgagtataacggatatagaaaccagaggagccaagacagtgacgtatttaacaacttctgtatcactactgaaa |
49191039 |
T |
|
| Q |
566 |
ctgtagccataaacatggcagcatgcaaagagggttgcgctcactatacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgctt |
665 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49191038 |
atgtagccataaacatggcggcatgcaaagagggttgcgctcactatacttgcttcagtgagtccaagtgacatagcagctaacacggcaacacgtgctt |
49190939 |
T |
|
| Q |
666 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataa |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49190938 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataa |
49190892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 49191288 - 49191237
Alignment:
| Q |
271 |
aaacaaatttagacaatgtttgtcttattgtgatagaatttagatttgtgaa |
322 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191288 |
aaacaaacttagagaatgtttgtcttattgtgatagaatttagatttgtgaa |
49191237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 759 - 824
Target Start/End: Original strand, 1850550 - 1850615
Alignment:
| Q |
759 |
aaaatcacaaacaaacttaataagtatagaatattatgattaaaattatcctaatatgcatccaac |
824 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
1850550 |
aaaatcacaaacaaacttaataagtatacaatattattattaaaattatcttaatatgcattcaac |
1850615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 2622073 - 2622028
Alignment:
| Q |
354 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
399 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2622073 |
taactaactcgtaactaccttaaacaatattcaactaattctaaca |
2622028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 4573136 - 4573181
Alignment:
| Q |
354 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
399 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||| |||| |
|
|
| T |
4573136 |
taactaacttataactatcttaaacaatactaaactaatttcaaca |
4573181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 699
Target Start/End: Original strand, 30475857 - 30475886
Alignment:
| Q |
670 |
tggattaccagctcctaattcatttgaaac |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30475857 |
tggattaccagctcctaattcatttgaaac |
30475886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 37214282 - 37214237
Alignment:
| Q |
354 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
399 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
37214282 |
taactaacttttaactaccttaaacaatatccaactaattctaaca |
37214237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 41356668 - 41356623
Alignment:
| Q |
354 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
399 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| ||||| |
|
|
| T |
41356668 |
taactaacttgtaacgaacttaaacaatattcaacgaattctaaca |
41356623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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