View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_12 (Length: 290)
Name: NF3822_low_12
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 11452989 - 11453267
Alignment:
| Q |
21 |
agaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtgatttcttttctgaagatgaagatggagctggtga |
120 |
Q |
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| T |
11452989 |
agaggggaggagcatctgagattgttgggacatctaatcctgtaactggtcctgatgcctttggtgatttctttactgaagatgaagatggagctggtga |
11453088 |
T |
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| Q |
121 |
tttcttttctgaagatggagctggtgagtcctttgttgatgactttgg------------tgatgactttgg------------tgatgaagctggggct |
196 |
Q |
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| T |
11453089 |
tttcttttctgaagatggagctggtgagtcctttgctgatgactttggtgattcctttgctgatgactttggtgatgactttggtgatgaagctggggct |
11453188 |
T |
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| Q |
197 |
tcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagccattgttgttattg |
275 |
Q |
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| T |
11453189 |
tcagcggccatagcgacgccaacaacggcaacaaagatgagcgcgagaacgaataccttagaagccattgttgttattg |
11453267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 11380927 - 11381033
Alignment:
| Q |
169 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagccattgtt |
268 |
Q |
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| T |
11380927 |
tgatgcctttggtgatgaagctggggcttcagcggccatagccacgccaacaatgacaacaaagatgagcgcgagaacgaatacctttgaagccattgtt |
11381026 |
T |
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| Q |
269 |
gttattg |
275 |
Q |
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| T |
11381027 |
gttattg |
11381033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 11396305 - 11396411
Alignment:
| Q |
169 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagccattgtt |
268 |
Q |
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| T |
11396305 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagccattgtt |
11396404 |
T |
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| Q |
269 |
gttattg |
275 |
Q |
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||||||| |
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| T |
11396405 |
gttattg |
11396411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 11404327 - 11404433
Alignment:
| Q |
169 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagccattgtt |
268 |
Q |
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| T |
11404327 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagccattgtt |
11404426 |
T |
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| Q |
269 |
gttattg |
275 |
Q |
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||||||| |
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| T |
11404427 |
gttattg |
11404433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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