View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_15 (Length: 239)
Name: NF3822_low_15
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2992873 - 2993095
Alignment:
| Q |
1 |
taatcattgataagcttttgtcatggtgtttgggtatatgcatcaccaaatagtacctacccaacgtaattacctacttagactcaagtcaaattgtaaa |
100 |
Q |
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| T |
2992873 |
taatcattgataagcttttgtcatggtgtttgggtatatgcatcaccaaatagtacctacccaacgtaattacctacttagactcaagtcaaattgtaaa |
2992972 |
T |
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| Q |
101 |
caaaagagactagatggtccatctccctgataagtatggccttgacttctttgagcaaaggaacataaatatacatatatgcaagaaatggttcaagtgt |
200 |
Q |
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| T |
2992973 |
caaaagagactagatggtccatctcccagataagtatggccttgacttctttgagcaaaggaacataaatatacatatatgcaagaaatggttcaagtgt |
2993072 |
T |
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| Q |
201 |
agaagatatgtacacggacttca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2993073 |
agaagatatgtacacggacttca |
2993095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 3001122 - 3001208
Alignment:
| Q |
79 |
tagactcaagtcaaattgtaaacaaaagagactagatggtccatctccctgataagtatggccttgacttctttgagcaaaggaacataa |
168 |
Q |
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| T |
3001122 |
tagactcaagtcaa-ttgtaaacac--gagactagatgatccatctcccttataagtatggccttgacttctttgaacaaaggaacataa |
3001208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 2928975 - 2928864
Alignment:
| Q |
79 |
tagactcaagtcaaattgtaaacaaaagagactagatggtccatctccctgataagta---tggccttgacttctttgagcaaaggaacataaatataca |
175 |
Q |
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||||||||| |||| |||||||| ||||||||||||| || |||||||| ||||||| ||||||| |||||||||||||||||||||| ||||| || |
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| T |
2928975 |
tagactcaatccaaaatgtaaacacaagagactagatgatctatctcccttataagtatggtggccttaacttctttgagcaaaggaacat-aatatgca |
2928877 |
T |
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| Q |
176 |
tatatgcaagaaa |
188 |
Q |
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|||||||| |||| |
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| T |
2928876 |
tatatgcatgaaa |
2928864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2660507 - 2660565
Alignment:
| Q |
1 |
taatcattgataagcttttgtcatggtgtttgggtatatgcatcaccaaatagtaccta |
59 |
Q |
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||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
2660507 |
taatcattgataagcttatgtcatggcgtttgggtaaatgcatcaccaattagtaccta |
2660565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2929091 - 2929033
Alignment:
| Q |
1 |
taatcattgataagcttttgtcatggtgtttgggtatatgcatcaccaaatagtaccta |
59 |
Q |
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||||||||||||||||| ||||| ||||||||| || ||||||||||| |||| ||||| |
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| T |
2929091 |
taatcattgataagcttatgtcaaggtgtttggataaatgcatcaccatatagcaccta |
2929033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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