View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3822_low_2 (Length: 679)

Name: NF3822_low_2
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3822_low_2
NF3822_low_2
[»] chr2 (5 HSPs)
chr2 (1-457)||(5763867-5764323)
chr2 (450-679)||(5764340-5764569)
chr2 (223-457)||(5833505-5833739)
chr2 (235-429)||(5821025-5821219)
chr2 (504-657)||(5833265-5833418)
[»] chr6 (2 HSPs)
chr6 (223-457)||(29331206-29331442)
chr6 (504-655)||(29330769-29330920)
[»] chr1 (4 HSPs)
chr1 (261-432)||(38527181-38527352)
chr1 (261-432)||(38568482-38568653)
chr1 (85-133)||(32635212-32635260)
chr1 (85-167)||(32660867-32660950)
[»] chr8 (2 HSPs)
chr8 (87-140)||(8402285-8402338)
chr8 (87-133)||(39165052-39165098)
[»] chr4 (4 HSPs)
chr4 (88-133)||(46206660-46206705)
chr4 (88-131)||(53456942-53456985)
chr4 (376-432)||(51198057-51198113)
chr4 (376-432)||(51211583-51211639)
[»] chr3 (1 HSPs)
chr3 (376-432)||(49738535-49738591)
[»] chr7 (1 HSPs)
chr7 (88-146)||(6428199-6428257)
[»] chr5 (2 HSPs)
chr5 (157-202)||(12974530-12974575)
chr5 (87-174)||(16263768-16263856)


Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 5763867 - 5764323
Alignment:
Q  1 tgctagcaatattaaggtttacagtaaaaccgcaacacaacggtcacaatttaataattgcaacattgtcatgatgtgtttatattgtcaagtagcatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5763867 tgctagcaatattaaggtttacagtaaaaccgcaacacaacggtcacaatttaataattgcaacattgtcatgatgtgtttattttgtcaagtagcatat 5763966  T
Q  101 tgactagaaatttacctcttaaggtgaataagtagggaatctagggtttgacccctgcccctgcatactacaatgttcctgtgaactgagctatgctcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  5763967 tgactagaaatttacctcttaaggtgaataagtagggaatctagggtttgacccctgcccctgcatactacaatgttcttgtcaactgagctatgctcac 5764066  T
Q  201 ggtgacaacatagtcataatattaataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattc 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5764067 ggtgacaacattgtcataatattaataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattc 5764166  T
Q  301 gtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5764167 gtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaat 5764266  T
Q  401 tctcattcaagatgccatgggagaaaaggtatatatattcctatgttagtatacaat 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5764267 tctcattcaagatgccatgggagaaaaggtatatatattcctatgttagtatacaat 5764323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 450 - 679
Target Start/End: Original strand, 5764340 - 5764569
Alignment:
Q  450 tatacaatgtgtaatgattttgctaataaatgaaagcatattataatgatatgtaggttgggaagtttattcaacttgctgcaacattttttggtggctt 549  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5764340 tatataatgtgtaatgattttgctaataaatgaaagcatattataatgatatgtaggttgggaagtttattcaacttgctgcaacattttttggtggctt 5764439  T
Q  550 tgcggttgccttcataaaaggatggagactagctgtagttttggttgcatgtataccttgtgttgttgtggttggtggattcatgtctatgttgatggca 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5764440 tgcggttgccttcataaaaggatggagactagctgtagttttggttgcatgtataccttgtgttgttgtggttggtggattcatgtctatgttgatggcc 5764539  T
Q  650 aaaatgtcgtctcgtgtgcaagacgcttat 679  Q
    |||||||||||||||| ||||| |||||||    
T  5764540 aaaatgtcgtctcgtgggcaagccgcttat 5764569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 223 - 457
Target Start/End: Complemental strand, 5833739 - 5833505
Alignment:
Q  223 taataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccat 322  Q
    |||| ||||| | |||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  5833739 taatgagggtgactttgttgcatgctgcagaggtaacatgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccat 5833640  T
Q  323 attaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatggga 422  Q
    |||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  5833639 attacaacaggatattgcattctttgatactgaaacaaacacaggagaggtaattggtagaatgtctggtgacacaattctcattcaagaggctatggga 5833540  T
Q  423 gaaaaggtatatatattcctatgttagtatacaat 457  Q
    |||||||||| ||| ||||| | ||||||||||||    
T  5833539 gaaaaggtatttatgttcctcttttagtatacaat 5833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 235 - 429
Target Start/End: Original strand, 5821025 - 5821219
Alignment:
Q  235 ttttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcagga 334  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||| ||||||| ||    
T  5821025 ttttgtttgatgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaaga 5821124  T
Q  335 tattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaagg 429  Q
    |||| | | ||||||||||||| ||| ||  ||||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  5821125 tatttcctactttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 5821219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 504 - 657
Target Start/End: Complemental strand, 5833418 - 5833265
Alignment:
Q  504 aggttgggaagtttattcaacttgctgcaacattttttggtggctttgcggttgccttcataaaaggatggagactagctgtagttttggttgcatgtat 603  Q
    |||||||||||||| ||||||||||| |||  |||| ||||||||||| | | || || |||||||||||| | |||||| |||||||  | |||||| |    
T  5833418 aggttgggaagttttttcaacttgcttcaaatttttgtggtggctttgtgatggcatttataaaaggatggcgcctagctatagttttactcgcatgtgt 5833319  T
Q  604 accttgtgttgttgtggttggtggattcatgtctatgttgatggcaaaaatgtc 657  Q
    |||||||||||  || | |||||  |||||||||||  ||||||| ||||||||    
T  5833318 accttgtgttgccgttgctggtgctttcatgtctatagtgatggctaaaatgtc 5833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 223 - 457
Target Start/End: Complemental strand, 29331442 - 29331206
Alignment:
Q  223 taataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccat 322  Q
    |||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29331442 taatgagggtgactttgttgcatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcgaggattcgtagtttgtacttgaaaaccat 29331343  T
Q  323 attaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatggga 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  29331342 attaaagcaggatattgcattctttgacactgaaacaaacacaggagaggtaattagtagaatgtctggtgacacaattctcattcaagaagctatggga 29331243  T
Q  423 gaaaaggtatat--atattcctatgttagtatacaat 457  Q
    ||||||||||||  || ||||| | ||||||||||||    
T  29331242 gaaaaggtatataaatcttcctcttttagtatacaat 29331206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 655
Target Start/End: Complemental strand, 29330920 - 29330769
Alignment:
Q  504 aggttgggaagtttattcaacttgctgcaacattttttggtggctttgcggttgccttcataaaaggatggagactagctgtagttttggttgcatgtat 603  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||   |||| || |||||||||||| |  ||||| |||| ||  | |||||| |    
T  29330920 aggttgggaagtttcttcaacttggttcaactttttttggtggctttgtaattgcatttataaaaggatggcgcttagctctagtcttactcgcatgtgt 29330821  T
Q  604 accttgtgttgttgtggttggtggattcatgtctatgttgatggcaaaaatg 655  Q
    ||||||| ||||||| |  ||||  |||||| ||||| ||||||| ||||||    
T  29330820 accttgtattgttgttgccggtgctttcatggctatggtgatggctaaaatg 29330769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 261 - 432
Target Start/End: Complemental strand, 38527352 - 38527181
Alignment:
Q  261 tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa 360  Q
    ||||||||||| ||||||||||||||| ||||||| ||  |  | ||||| |||||||| |||||||  || ||| || | |||||||| |  |||||||    
T  38527352 tgttggatggtaacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa 38527253  T
Q  361 acacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 432  Q
    |||||||||||||  | || |||||||||||||| ||  |||| ||||||||||||||||| || |||||||    
T  38527252 acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 38527181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 261 - 432
Target Start/End: Complemental strand, 38568653 - 38568482
Alignment:
Q  261 tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa 360  Q
    ||||||||||| ||||||||||||||| ||||||| ||  |  | ||||| |||||||| |||||||  || ||| || | |||||||| |  |||||||    
T  38568653 tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa 38568554  T
Q  361 acacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 432  Q
    ||||||||||||| || || |||||||| ||||| ||  |||| ||||||||||||||||| || |||||||    
T  38568553 acacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtat 38568482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 32635260 - 32635212
Alignment:
Q  85 ttgtcaagtagcatattgactagaaatttacctcttaaggtgaataagt 133  Q
    |||||||||||| || || ||||||||| ||||||||||||||||||||    
T  32635260 ttgtcaagtagcctagtggctagaaattcacctcttaaggtgaataagt 32635212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 32660950 - 32660867
Alignment:
Q  85 ttgtcaagtagcatattgactagaaatttacctcttaaggtgaataagtagggaatctagggtttg-acccctgcccctgcata 167  Q
    |||||||||||| || || ||||||||| ||||||||||||||| |||| |||  ||  ||||||| ||||| |||||||||||    
T  32660950 ttgtcaagtagcctagtggctagaaattcacctcttaaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcata 32660867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 8402285 - 8402338
Alignment:
Q  87 gtcaagtagcatattgactagaaatttacctcttaaggtgaataagtagggaat 140  Q
    |||||||||| || || ||||||||| |||||||||||||||||||| ||||||    
T  8402285 gtcaagtagcctagtggctagaaattcacctcttaaggtgaataagtggggaat 8402338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 39165098 - 39165052
Alignment:
Q  87 gtcaagtagcatattgactagaaatttacctcttaaggtgaataagt 133  Q
    |||||||||| || || ||||||||| ||||||||||||||||||||    
T  39165098 gtcaagtagcctagtggctagaaattcacctcttaaggtgaataagt 39165052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 46206705 - 46206660
Alignment:
Q  88 tcaagtagcatattgactagaaatttacctcttaaggtgaataagt 133  Q
    |||||||||||| || ||||||||| ||||||||||||||||||||    
T  46206705 tcaagtagcatagtggctagaaattcacctcttaaggtgaataagt 46206660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 53456985 - 53456942
Alignment:
Q  88 tcaagtagcatattgactagaaatttacctcttaaggtgaataa 131  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||    
T  53456985 tcaagtagcatagtgactataaattaacctcttaaggtgaataa 53456942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 51198057 - 51198113
Alignment:
Q  376 ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 432  Q
    |||| |||||||||||||| ||  |||| ||||||||||||||||| || |||||||    
T  51198057 ttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 51198113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 51211583 - 51211639
Alignment:
Q  376 ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 432  Q
    |||| |||||||| ||||| ||| |||| |||||||| ||||||||||| |||||||    
T  51211583 ttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtat 51211639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 49738591 - 49738535
Alignment:
Q  376 ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 432  Q
    |||| ||||| || ||||||||| |||| |||||||||||||||||||| |||||||    
T  49738591 ttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat 49738535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 6428257 - 6428199
Alignment:
Q  88 tcaagtagcatattgactagaaatttacctcttaaggtgaataagtagggaatctaggg 146  Q
    |||||||||||| || ||||||||| ||| |||||||||||||||| | ||||| ||||    
T  6428257 tcaagtagcatagtggctagaaattcaccccttaaggtgaataagtggagaatccaggg 6428199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 12974575 - 12974530
Alignment:
Q  157 gcccctgcatactacaatgttcctgtgaactgagctatgctcacgg 202  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||||||    
T  12974575 gcccctgcaaactgcaatgtccctgttaactgagctatgctcacgg 12974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 16263856 - 16263768
Alignment:
Q  87 gtcaagtagcatattgactagaaatttacctcttaaggtgaataagtagggaatctagggtttg-acccctgcccctgcatactacaat 174  Q
    ||||| |||| || || ||||||||| |||  ||||||||||||||| |||||||  ||||| | ||||| ||||||||||||| ||||    
T  16263856 gtcaattagcgtagtggctagaaattcaccctttaaggtgaataagtggggaatccggggttagaaccccggcccctgcatactgcaat 16263768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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