View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_3 (Length: 626)
Name: NF3822_low_3
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_3 |
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| [»] scaffold0201 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 608
Target Start/End: Complemental strand, 1982450 - 1981854
Alignment:
| Q |
11 |
catcatcatcacataacccacccacgaatgaattgttacaaacttctnnnnnnntcttaagagatttaactgagttaaacaaaggttcccaacatgctct |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1982450 |
catcttcatcacataacccacccacgaatgaattgttacaaacttctaaaaaaatcttaagagatttaactgagttaaacaaaggttcccaacatgctct |
1982351 |
T |
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| Q |
111 |
cacaatagcatgcacaaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaaaaagaagttgagccacatgaagaa |
210 |
Q |
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| T |
1982350 |
cacaatagcatgcacaaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaaaaagaagttgagccacatgaagaa |
1982251 |
T |
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| Q |
211 |
gaaacttagtgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaacacaactatgatgt |
310 |
Q |
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| T |
1982250 |
gaaacttagtgtctaagagtaacgccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaacacaactatgatgt |
1982151 |
T |
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| Q |
311 |
ctctgccgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgccctttctctggtgtc |
410 |
Q |
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| T |
1982150 |
ctctgctgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgccctttctctggtgtc |
1982051 |
T |
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| Q |
411 |
gtcccctctcccgaaacctgtagatccacaatctccagtagaaaagaattggtctcaaatcccaccattccccccacctccaaaaccacctaaatgagtc |
510 |
Q |
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| T |
1982050 |
gtcccctctcccgaaaccagtagatccacaatctccagtagaaaagaattgttctcaaatcccaccattc-ccccacctccaaaaccacctaaatgagtc |
1981952 |
T |
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| Q |
511 |
tctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtcaagaggagacattgttagacactggacc |
608 |
Q |
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| T |
1981951 |
tctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtcaagaggagacattgttagacactggacc |
1981854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 25840201 - 25839962
Alignment:
| Q |
26 |
acccacccacgaatgaattgttacaaacttctnnnnnnntcttaagagatttaactgagttaaacaaaggttcccaacatgctctcacaatagcatgcac |
125 |
Q |
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| T |
25840201 |
acccacacatgaacgaattgtcacaaacttctaaaaagatctcaagggatttggctgagttagacaaagcttcccaacaatatctcaaaatagcctgcgc |
25840102 |
T |
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| Q |
126 |
aaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaaaaagaagttgagccacatgaagaagaaacttagtgtcta |
225 |
Q |
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| T |
25840101 |
aaaaatcttcgagaagtttgaaaaattaaaagaaaatttgaaagaggagagtgccgagaaaaaataaggtgaaccacacgaagaagcaactcagtgtcta |
25840002 |
T |
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| Q |
226 |
agagtaacaccttttaagaaaccacatgacaacaccactt |
265 |
Q |
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| T |
25840001 |
atagtaacacctcttaaacaaacacatgacagcacgactt |
25839962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 583
Target Start/End: Complemental strand, 37089469 - 37089377
Alignment:
| Q |
490 |
ccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtcaag |
583 |
Q |
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| T |
37089469 |
ccaaaaccacatgaatgcatctctatttatggaatctttgaccttaag-acaaggtcaattttgaggagcggagtagtgatagctttggtcaag |
37089377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 37089594 - 37089542
Alignment:
| Q |
343 |
ttgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgc |
395 |
Q |
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| T |
37089594 |
ttgaagcgactgaatctgctcaaaactcagccgccaccatcgttaatctctgc |
37089542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 484 - 571
Target Start/End: Original strand, 21030 - 21117
Alignment:
| Q |
484 |
ccacctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgata |
571 |
Q |
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| T |
21030 |
ccacctccaaaaccacctaattgcgtctctatttacggaatcattgactttgaggacaaggtcaattttgaagagcggagtagtgata |
21117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 20799 - 20875
Alignment:
| Q |
220 |
tgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaa |
296 |
Q |
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| T |
20799 |
tgtctacgagtagcacctcttaagcaaccatacatcaacaccacttcagcgccaccgtccagggcaccaccacacaa |
20875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 559
Target Start/End: Original strand, 23488423 - 23488498
Alignment:
| Q |
484 |
ccacctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagc |
559 |
Q |
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| T |
23488423 |
ccacctccaaaaccacctaattgcatctctatttacggaatcattgactttgaggacaaggtcaattttgaagagc |
23488498 |
T |
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