View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_4 (Length: 563)
Name: NF3822_low_4
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 26833676 - 26833438
Alignment:
| Q |
14 |
cagagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833676 |
cagagagccattgatcgtgccattgctgagagttgcagtgtttgtttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtg |
26833577 |
T |
|
| Q |
114 |
atttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833576 |
atttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatgg |
26833477 |
T |
|
| Q |
214 |
ttcttgttcaagttccaatgtataatgaaagagaggtga |
252 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
26833476 |
ttcttgttcaagttccaatgtataatgaaagagaggtga |
26833438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 323 - 546
Target Start/End: Complemental strand, 26833367 - 26833144
Alignment:
| Q |
323 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833367 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
26833268 |
T |
|
| Q |
423 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaannnnnnnncttccatttcggttctcttg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26833267 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaattttttttcttccattttggttctcttg |
26833168 |
T |
|
| Q |
523 |
ttacttgttagacacttcagtcat |
546 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
26833167 |
ttacttgttagacacttcagtcat |
26833144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 26786886 - 26786649
Alignment:
| Q |
15 |
agagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtga |
114 |
Q |
| |
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||||| || |||||||||||| ||||||||| |||||||||| | |||||| ||||||| |||||||| |||||||||| |||||||||||||||||||| |
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| T |
26786886 |
agagaacctttgatcgtgccaatgctgagagctgcagtgtttatctgcctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtga |
26786787 |
T |
|
| Q |
115 |
tttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggt |
214 |
Q |
| |
|
||| || |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
26786786 |
tttgtttagtgaagttgtttaaaagaacacctgagaaacgttataaatgggagactattaaggatgatgttgagttggaaaactctaattaccctattgt |
26786687 |
T |
|
| Q |
215 |
tcttgttcaagttccaatgtataatgaaagagaggtga |
252 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||| |
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| T |
26786686 |
tcttgttcaaatcccaatgtacaatgaaagagaggtga |
26786649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 26799607 - 26799425
Alignment:
| Q |
70 |
tgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagac |
169 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||| |||||| |||| |||||||||||||||| |||| ||||||||| ||||||||| || | |
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|
| T |
26799607 |
tgtcattgataatgttggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacaccagagaagtgttataaatttaaggc |
26799508 |
T |
|
| Q |
170 |
tattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26799507 |
tattgaggatgatgttgagttgggaaactctaattatcccatggttcttgttcaagttccaatgtacaatgaaagagaggtga |
26799425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 332 - 470
Target Start/End: Complemental strand, 26786570 - 26786432
Alignment:
| Q |
332 |
atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgat |
431 |
Q |
| |
|
||||| || |||| ||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26786570 |
atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat |
26786471 |
T |
|
| Q |
432 |
tcaactgatcctacaattaaggtatctatgctacaaaac |
470 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||||||||| |
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| T |
26786470 |
tcaactgacccaacaatcaaggtatatatgctacaaaac |
26786432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 26823699 - 26823517
Alignment:
| Q |
70 |
tgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagac |
169 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| |||||| |||| |||||||||||||||| |||| |||||||||||||||||||| ||| | |
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| T |
26823699 |
tgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttataaatttgaggc |
26823600 |
T |
|
| Q |
170 |
tattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| || ||||||||||| || | |||||||| |||||||||||||||| |
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| T |
26823599 |
tattgaggatgatgttgagttgggaaactcctattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtga |
26823517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 26823436 - 26823309
Alignment:
| Q |
339 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
438 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
26823436 |
ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26823337 |
T |
|
| Q |
439 |
atcctacaattaaggtatctatgctaca |
466 |
Q |
| |
|
| || ||||| ||||||| |||||||| |
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|
| T |
26823336 |
acccaacaatcaaggtatacatgctaca |
26823309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 339 - 456
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
| Q |
339 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
438 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
26799345 |
ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26799246 |
T |
|
| Q |
439 |
atcctacaattaaggtat |
456 |
Q |
| |
|
| || || || ||||||| |
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|
| T |
26799245 |
acccaaccatcaaggtat |
26799228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 442
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
| Q |
352 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc |
442 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| | |||||||| |||||||| || || || ||| |||||||||| ||||| ||||| |
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|
| T |
41545969 |
aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc |
41546059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 41545758 - 41545815
Alignment:
| Q |
126 |
aagttgtttggtagaaaaccagagaaacgttataaatgggagactattaaggatgatg |
183 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |
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|
| T |
41545758 |
aagttgtttggtcataaaccagagaaacattataaatgggaggcacttaaggatgatg |
41545815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 41916711 - 41916892
Alignment:
| Q |
69 |
atgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggaga |
168 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| ||||| |||| ||| || ||||||| | ||||| |||||||| || |||||||| |||||||| |
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|
| T |
41916711 |
atgtcggtgatgatgttcattgagagggtttatatgggtgttgtcattactcttgtgaagctatttggaagaaaacctgaaaaacgttacaaatgggaac |
41916810 |
T |
|
| Q |
169 |
ctattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggt |
250 |
Q |
| |
|
| |||||||||||| ||||||| || |||||| ||| |||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
41916811 |
cgattaaggatgatattgagttagggaactcttgttatcctatggttcttgttcaaatacctatgtacaatgaaagagaggt |
41916892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
352 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
451 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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|
| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
|
| Q |
452 |
ggta |
455 |
Q |
| |
|
|||| |
|
|
| T |
41917092 |
ggta |
41917095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 2021636 - 2021679
Alignment:
| Q |
207 |
cctatggttcttgttcaagttccaatgtataatgaaagagaggt |
250 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
2021636 |
cctatggttcttgttcagattccaatgtgtaatgaaagagaggt |
2021679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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